#genome
stringclasses
121 values
asm_name
stringclasses
120 values
assembly_accession
stringclasses
120 values
bioproject
stringclasses
45 values
biosample
stringclasses
120 values
wgs_master
float64
seq_rel_date
stringclasses
98 values
submitter
stringclasses
76 values
ftp_path
stringclasses
120 values
img_id
float64
637M
2.51B
gtdb_id
stringclasses
120 values
scope
stringclasses
3 values
assembly_level
stringclasses
1 value
genome_rep
stringclasses
1 value
refseq_category
stringclasses
3 values
release_type
stringclasses
2 values
taxid
float64
1.15k
681k
species_taxid
float64
7
911k
organism_name
stringclasses
120 values
infraspecific_name
stringclasses
112 values
isolate
stringclasses
1 value
superkingdom
stringclasses
2 values
phylum
stringclasses
18 values
class
stringclasses
30 values
order
stringclasses
56 values
family
stringclasses
75 values
genus
stringclasses
89 values
species
stringclasses
117 values
classified
bool
1 class
lv1_group
stringclasses
2 values
lv2_group
stringclasses
13 values
score_faa
float64
0.93
1
score_fna
float64
0.88
1
score_rrna
float64
0.1
1
score_trna
float64
0.6
1
total_length
float64
618k
9.12M
contigs
float64
1
22
gc
float64
22.5
72.2
n50
float64
616k
9.03M
l50
float64
1
1
proteins
float64
525
7.92k
protein_length
float64
172k
2.68M
coding_density
float64
74
96.9
completeness
float64
76.3
100
contamination
float64
0
4.4
strain_heterogeneity
float64
0
100
markers
float64
124
383
5s_rrna
stringclasses
2 values
16s_rrna
stringclasses
1 value
23s_rrna
stringclasses
1 value
trnas
float64
14
20
draft_quality
stringclasses
2 values
start_position
int64
0
10M
human_label
int64
0
1
autotrain_text
stringlengths
150
150
autotrain_label
class label
121 classes
G000010985
ASM1098v1
GCF_000010985.1
PRJNA224116
SAMD00060965
null
2010/03/05
Japan Agency for Marine-Earth Science and Technology
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/985/GCF_000010985.1_ASM1098v1
646,564,525
RS_GCF_000010985.1
Monoisolate
Complete Genome
Full
representative genome
Major
639,282
197,162
Deferribacter desulfuricans SSM1
strain=SSM1
null
Bacteria
Deferribacteres
Deferribacteres
Deferribacterales
Deferribacteraceae
Deferribacter
Deferribacter desulfuricans
true
Eubacteria
Bacteria
1
0.996
1
1
2,542,933
2
30.31
2,234,389
1
2,468
805,380
93.314963
96.55
1.72
0
345
yes
yes
yes
20
high
2,410,200
0
TATTATAAATATCATCAAAAGTATCATTATAATTTCCTAATTTAATTGTACCAACAGATATACCTTCATTATTTACACATGCTGTTAAAATTTTTTTATATTTAAAAATAAAACCTGTTTGTTTTACAATTTCATGAGCTACTGTCCAAT
33Deferribacter desulfuricans SSM1
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
8,110,350
1
CAGGTTATGGGAAAAGGGTTGTCATTATGTTTTACAGAAACATAAGCTGGCACAATTGTGTTATAGAAAGAGTAACTGGGCAACATCTACCAAAATTACAAACATATTCATCTGTTTCTCCAGCACTTATTGAAATTTATTCTAAAGATA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
1,227,750
1
CATAGAGAAACACATTGGCCCGGTGGAAGCTCTACGTCTAAGGTAAGACCAGCACCATGCTAGTGACCTTTTATTCCCATCTGTGCACACAGCAGAAGGTCCACACGCACTGCTGGTGAGGGTGAGAGCCTGGCCAGGCAGGACAGCACG
120homo sapiens
G000009705
ASM970v1
GCF_000009705.1
PRJNA224116
SAMD00061094
null
2004/05/11
Kazusa
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/705/GCF_000009705.1_ASM970v1
637,000,199
RS_GCF_000009705.1
Monoisolate
Complete Genome
Full
representative genome
Major
103,690
103,690
Nostoc sp. PCC 7120
null
null
Bacteria
Cyanobacteria
null
Nostocales
Nostocaceae
Nostoc
Nostoc sp. PCC 7120
true
Eubacteria
Cyanobacteria
1
0.992
0.9
1
7,211,789
7
41.27
6,413,771
1
6,159
2,024,679
82.716938
99.19
0
0
360
yes
yes
yes
20
high
3,067,350
0
TTACGGCTTCTTAAACAGTGGTCTGTCACCGATAATAAGGTGTTGGCATCGGGGGGAAGATATACCCGAATGATCTCAGATTTTTTGTTAACTACATGATCGATAAATCCGGGGTCTTGGTGAGAGAATCCGTTATGGTCTTGTCGCCAA
70Nostoc sp. PCC 7120 ASM970v1
G000009925
ASM992v1
GCF_000009925.1
PRJNA58195
SAMD00061068
null
2004/09/16
Kitasato Univ.
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/925/GCF_000009925.1_ASM992v1
637,000,025
RS_GCF_000009925.1
Monoisolate
Complete Genome
Full
reference genome
Major
295,405
817
Bacteroides fragilis YCH46
strain=YCH46
null
Bacteria
Bacteroidetes
Bacteroidia
Bacteroidales
Bacteroidaceae
Bacteroides
Bacteroides fragilis
true
Eubacteria
Bacteroidetes
1
0.998
0.9
1
5,310,990
2
43.2
5,277,274
1
4,416
1,603,639
88.979964
99.26
0
0
347
yes
yes
yes
20
high
1,405,560
0
TTCAGGTGACGGATTTTTCAGCCATCACCTTGTCAAAATCCTCTATTAGCAGGAACATGGATTTGCCGTGGTGTATTTTTCGGATGTTGTTATAGCGTGCATAGTTATAGACATCATCCCTACGCAAACCATATTTTGCCATTGCTTCGG
10Bacteroides fragilis YCH46
G000010605
ASM1060v1
GCF_000010605.1
PRJNA224116
SAMD00060929
null
2008/04/08
The University of Tokyo
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/605/GCF_000010605.1_ASM1060v1
641,522,653
RS_GCF_000010605.1
Monoisolate
Complete Genome
Full
representative genome
Major
455,632
1,911
Streptomyces griseus subsp. griseus NBRC 13350
strain=NBRC 13350
null
Bacteria
Actinobacteria
Actinobacteria
Streptomycetales
Streptomycetaceae
Streptomyces
Streptomyces griseus
true
Eubacteria
Actinobacteria
1
1
1
1
8,545,929
1
72.23
8,545,929
1
7,113
2,547,362
87.837226
99.84
0
0
357
yes
yes
yes
20
high
8,366,800
0
CCGAGGAGGATCGCGGCGGCCAGGGAACGGTCGAGCGCGCGCAAGCCCTGTCGCCTGCGGCGGGCCCGGTCAGTGGCGGTGGCATCGGCCAGTGCGTTGTCGGCGAGGAGCCCTCTCGCTGCGGCGCTGCGGTGCAGGTAGCCGCGTTCG
96Streptomyces griseus subsp. griseus NBRC 13350
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,649,900
1
GGGCCAGGAGAGGAGGCAGCCAGAGGTGAATCTGAGGTTCCTCCAGGCCATGGGGCAGGCTGAGAGCTGATACTGGCCCCTCTCGCCCCAGCCAGAGCAGAGGGGTTCAGATGCACTGGGCCAGGCTATGTGGAAAACCCCTCACTGCGC
120homo sapiens
G000006845
ASM684v1
GCF_000006845.1
PRJNA57611
SAMN02604088
null
2005/02/14
Univ. Oklahoma
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/845/GCF_000006845.1_ASM684v1
637,000,188
RS_GCF_000006845.1
Monoisolate
Complete Genome
Full
reference genome
Major
242,231
485
Neisseria gonorrhoeae FA 1090
strain=FA 1090
null
Bacteria
Proteobacteria
Betaproteobacteria
Neisseriales
Neisseriaceae
Neisseria
Neisseria gonorrhoeae
true
Eubacteria
Proteobacteria
1
1
1
1
2,153,922
1
52.69
2,153,922
1
2,142
609,210
83.31778
99.82
0.21
0
323
yes
yes
yes
20
high
448,760
0
AAGAATGGCGGGGAGCTTCGGTTGTTTCAATATGTCCGAGCATACTAAAGACGATATTGTTGATTCAAGTAATCAAACTCAATCTAACCTTGCAAAACCCGGTGCCAAACAAGAAAATCCCCTTTTTTCCTTAAAAAGGAGCGGCATGGA
66Neisseria gonorrhoeae FA 1090
G000009925
ASM992v1
GCF_000009925.1
PRJNA58195
SAMD00061068
null
2004/09/16
Kitasato Univ.
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/925/GCF_000009925.1_ASM992v1
637,000,025
RS_GCF_000009925.1
Monoisolate
Complete Genome
Full
reference genome
Major
295,405
817
Bacteroides fragilis YCH46
strain=YCH46
null
Bacteria
Bacteroidetes
Bacteroidia
Bacteroidales
Bacteroidaceae
Bacteroides
Bacteroides fragilis
true
Eubacteria
Bacteroidetes
1
0.998
0.9
1
5,310,990
2
43.2
5,277,274
1
4,416
1,603,639
88.979964
99.26
0
0
347
yes
yes
yes
20
high
1,548,430
0
CTTTTCTGGGCAAAACGCTGCGTGAATCGGGCATTCGTGATAAATACCATTGCCTGATTGCCGGCGTGGAGCGGGGAGGAGAAGCTTTGATGACGCCTGACGTGAATGTTCCTTTTGAAGAAGGAGATGTAGTGTGGGTGGTAGGTGAGA
10Bacteroides fragilis YCH46
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,363,250
1
GCACTGGGCCGGAGGGTGGGATAACCCAGCCTGCAGACAGACCTGCTCCCGGGCTACGGTCGCCAGTGCATATGGACTCCGTTTGCCCTCTGAGGCTGGCAGTGACTCGACTGAACGCAGCCCAGTCTCTGAAGGGCGGTGGTGCTGATT
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,098,200
1
CAGCCTGGAGCAGCACCCACACTCCAGGTGAGCATCTGACAGCCTGAAGCAGCACCCACACCCCCAGGTGAGCATCTGACAGCCTGGAACAGCACCCTGCACCCCCAAGTGAGCATCTGACCACCTGGAGCAGCAACCACACCCCCAGAT
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
1,463,400
1
GTGCCCTGCCTGGGGAGCCGGGCCATGGAGCCCAGACATGGCACGGATTGATATTGTTGAGCCAGTGCAGCAGCCCCTGTGTGTCACCTGACAACGGTGACCCCATCTGTGTCCCATCCACCTGCCCGGAGGAGCCCGACGTGGTCCCAG
120homo sapiens
G000007145
ASM714v1
GCF_000007145.1
PRJNA57887
SAMN02603845
null
2002/05/24
Sao Paulo state (Brazil) Consortium
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/145/GCF_000007145.1_ASM714v1
637,000,344
RS_GCF_000007145.1
Monoisolate
Complete Genome
Full
reference genome
Major
190,485
339
Xanthomonas campestris pv. campestris str. ATCC 33913
strain=ATCC 33913
null
Bacteria
Proteobacteria
Gammaproteobacteria
Xanthomonadales
Xanthomonadaceae
Xanthomonas
Xanthomonas campestris
true
Eubacteria
Proteobacteria
1
1
0.9
1
5,076,188
1
65.07
5,076,188
1
4,292
1,472,146
85.453159
99.64
0
0
358
yes
yes
yes
20
high
459,290
0
GCGGGCAGATGCACCTTGCTGCCGCGTCGCATCACACACGGTGTGCATCTCTCAGGGCAGCGCTGCAACAAAGCGGTGCAACGCCTCGGCCACCTGGTCGGCGTGGCCCAGGAACGGTGCATGTCCGCCGCCGTCGATGGTGAGTGCCTG
112Xanthomonas campestris pv. campestris str. ATCC 33913
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
3,867,900
1
TTCATTGGCAGAATTTATGCAGCAGGCACCTCTTGCACACTTGCTCCTTGGAGGAGGGCTATGGAGGCATAGTACAGGCCCTTCAGGAACTCAAGTCCACCGATGATGGTGGAAATAATAACATCCATGTTTGAAGCAGCTGCCAGCCCA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
9,513,600
1
ATTAGGCAGGTGTGGTGGCAGGCACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGAAGAATGGTGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCTGAGATCGCGCCAATGCACTCCAGCCTGGGCAACAGAGTGAGACTCCCGTCT
120homo sapiens
G000008345
ASM834v1
GCF_000008345.1
PRJNA224116
SAMN02603281
null
2004/07/30
Goettingen Genomics Laboratory
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/345/GCF_000008345.1_ASM834v1
637,000,215
RS_GCF_000008345.1
Monoisolate
Complete Genome
Full
representative genome
Major
267,747
1,747
Propionibacterium acnes KPA171202
strain=KPA171202
null
Bacteria
Actinobacteria
Actinobacteria
Propionibacteriales
Propionibacteriaceae
Cutibacterium
Cutibacterium acnes
true
Eubacteria
Actinobacteria
1
1
1
1
2,560,265
1
60.01
2,560,265
1
2,373
780,330
89.799572
100
0
0
319
yes
yes
yes
20
high
1,259,310
0
AAAGTGTTTGCCCAGCACAACCGCAATACGGTAGCTGGTACCGCTCAGGCAGCCGGAATCGCGATGATGATTGCCGCCCGGCATGGTCTTCCAGTTGCTCTTCACACTCCAAGTGAGGTTAAAGCGGCAATCTCGGGTTCAGGACGAGCC
77Propionibacterium acnes KPA171202
G000011005
ASM1100v1
GCA_000011005.1
PRJDA20361
SAMD00060931
null
2009/12/25
NITE
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/011/005/GCA_000011005.1_ASM1100v1
2,505,679,075
GB_GCA_000011005.1
Monoisolate
Complete Genome
Full
na
Major
304,371
570,267
Methanocella paludicola SANAE
strain=SANAE
null
Archaea
Euryarchaeota
Methanomicrobia
Methanocellales
Methanocellaceae
Methanocella
Methanocella paludicola
true
Archaea
Euryarchaeota
1
1
0.8
0.9
2,957,635
1
54.92
2,957,635
1
3,055
877,570
87.405714
100
0.65
0
198
no
yes
yes
17
medium
137,280
0
CTTTCGCCTTCGGCACCGTGAACCGCATGATGAACAGGCTGATCTCGTAAAAAATAATTAAAGGCACGCCCACCATGACCTGGGTGATCACGTCGGGGCTGGTCACCAGCGCCGCGACGATCAGGATGATGACCCACATGTGGCGCCGGT
58Methanocella paludicola SANAE
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
1,231,650
1
AGTGCACCACACCATGAAACTCTCTACAGCTCCTGAGTTACAGAACGACAGTATAATACTATAGTTATATAATACTGTATAATACTACTGCATAACTATTGTATAATACTGTATTTCTGGATGGAATTATAGGGTCTCCCAACATAAAAG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,536,600
1
CTGAGGGTCCCCAGCTGCTGAAGGCAGAGGAATCGCGAGTCAGGCAATGTGGATTTGAATGTTGAATAAAGAGTATCCTACCTGGGAGGCTTTGCACCAGTCATGTACCCTGACTGAGCCCCCATCTTCTCACCTGTAAATAGCAATATC
120homo sapiens
G000007145
ASM714v1
GCF_000007145.1
PRJNA57887
SAMN02603845
null
2002/05/24
Sao Paulo state (Brazil) Consortium
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/145/GCF_000007145.1_ASM714v1
637,000,344
RS_GCF_000007145.1
Monoisolate
Complete Genome
Full
reference genome
Major
190,485
339
Xanthomonas campestris pv. campestris str. ATCC 33913
strain=ATCC 33913
null
Bacteria
Proteobacteria
Gammaproteobacteria
Xanthomonadales
Xanthomonadaceae
Xanthomonas
Xanthomonas campestris
true
Eubacteria
Proteobacteria
1
1
0.9
1
5,076,188
1
65.07
5,076,188
1
4,292
1,472,146
85.453159
99.64
0
0
358
yes
yes
yes
20
high
4,162,730
0
CACGTTCGGCAAGTCTGGCGTGGTGCATCGCGCCGAGGTGGACCAGAGCGCCGAGGTTCGGCGGCTGAAGGCAGAGTTGCGTCGAGTGACCGAGGAGCGCGACATCCTAAAAAAGGCCGCCGCGTACTTTGCCAAGGGGTAAAGGCAAAG
112Xanthomonas campestris pv. campestris str. ATCC 33913
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
1,005,150
1
TGAAAATAAGCCATCTCGTGGCAAAAAAAGGAAACTAATGATGTGAATACTAACTATGGAGCAGACAACAGAACAAGAGCTTATCCCCGATGCATGCGTGAACACATGGAGACAGACGGACACCAAAATGGTACCTCTGAGAGACCACTT
120homo sapiens
G000006745
ASM674v1
GCF_000006745.1
PRJNA57623
SAMN02603969
null
2001/01/09
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/745/GCF_000006745.1_ASM674v1
637,000,333
RS_GCF_000006745.1
Monoisolate
Complete Genome
Full
reference genome
Major
243,277
666
Vibrio cholerae O1 biovar El Tor str. N16961
strain=N16961
null
Bacteria
Proteobacteria
Gammaproteobacteria
Vibrionales
Vibrionaceae
Vibrio
Vibrio cholerae
true
Eubacteria
Proteobacteria
1
0.998
0.9
1
4,033,464
2
47.49
2,961,149
1
3,594
1,184,587
86.533164
99.86
0.03
0
360
yes
yes
yes
20
high
4,020,120
0
GATGCGCAGCAAAAGCCAAGCGCCGTTCGTCAGGCAACCCAAAAGCCGACCTTAGTGTTTTTTGTGTTAGGTGAAACTGCACGAGTACAAAACTACCAATACTTGGGTTATCCGCGTGATACCAATGCTTATACCGCCCCTTTCCAGCCG
107Vibrio cholerae O1 biovar El Tor str. N16961
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
9,996,300
1
TTTTCGATGCTAAACTTCATTGGGAAAACCAGCAAAGGCTGGCTGGAGGACACGGGAATATTCTCTTCTCTGGACACCAGGGGAGCGGACTCCCTGAGAATGGCTGCTGACCGTCCGTTGTTTTCTGCCGAGCTGAGCTCATATTCATAA
120homo sapiens
G000007645
ASM764v1
GCF_000007645.1
PRJNA57861
SAMN02603126
null
2002/12/20
Chinese National HGC, Shanghai
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/645/GCF_000007645.1_ASM764v1
637,000,281
RS_GCF_000007645.1
Monoisolate
Complete Genome
Full
reference genome
Major
176,280
1,282
Staphylococcus epidermidis ATCC 12228
strain=ATCC 12228
null
Bacteria
Firmicutes
Bacilli
Bacillales
Staphylococcaceae
Staphylococcus
Staphylococcus epidermidis
true
Eubacteria
Firmicutes
1
0.977
0.9
1
2,564,615
7
32.05
2,499,279
1
2,354
721,937
82.93198
99.81
0
0
345
yes
yes
yes
20
high
566,540
0
TCTTTTGTAATCTGTATGATAAGATTTTATTCGGATTTCTCATTTTTATATCAGCATCAGTATTATTATCAAATTTTTTTACTTCATCGATTGTTTGTTATATAACAGAATTGTGGACTTCTTGTTGTTCGGAAGATGAAGAATTTTCTT
88Staphylococcus epidermidis ATCC 12228 ASM764v1
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
586,200
1
CTGGGCGCCCCGAGGAGGCGGAGCTGCTGGGAGGGGCCTCCCTCCGCCCGATCCTGTTTAATCTCAAACTCTAGGCCCTGGGGACGCGCCACCCTTCCCGCCGAGGAGACTGGGTTTTCCTCCCAGGGTTCTCCAAGCAAAGCCTGTCTG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
1,549,200
1
AGCATCCATGCCCTGGGGATTGGGTGCCACCGGTCAAGGGCTCCACGGGGCTGGCTCTGGGGGAGGGAGAGCGGGCGCCATGTTGTGTGTGTGGTGCGTGTGGCGCGTGGGTGAGGGTATGGCCGGCTGCGTAAGTTTGTGGAAGCGTTC
120homo sapiens
G000008665
ASM866v1
GCF_000008665.1
PRJNA224116
SAMN02603985
null
1999/12/22
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/665/GCF_000008665.1_ASM866v1
638,154,502
RS_GCF_000008665.1
Monoisolate
Complete Genome
Full
representative genome
Major
224,325
2,234
Archaeoglobus fulgidus DSM 4304
strain=DSM 4304
null
Archaea
Euryarchaeota
Archaeoglobi
Archaeoglobales
Archaeoglobaceae
Archaeoglobus
Archaeoglobus fulgidus
true
Archaea
Euryarchaeota
1
1
0.9
0.9
2,178,400
1
48.58
2,178,400
1
2,518
688,447
93.086761
100
0
0
186
no
yes
yes
17
medium
1,421,290
0
AGGTTGTGGGCTTGTTGAGAGGTTTAAGGGGTTTAAGCCCAGTGATGTTTGTGATTTAGAAACGTTAGATCGGTAAAATTGTGTTCTTTTGGTTGTTGCGACATTTGGCATGAAGTACGCTAAACCCTATCAAAAAGATTACAGAAAGCC
3Archaeoglobus fulgidus DSM 4304
G000009985
ASM998v1
GCF_000009985.1
PRJNA224116
SAMD00061077
null
2005/12/01
Tokyo University of Agriculture and Technology, Japan
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/985/GCF_000009985.1_ASM998v1
637,000,155
RS_GCF_000009985.1
Monoisolate
Complete Genome
Full
representative genome
Major
342,108
84,159
Magnetospirillum magneticum AMB-1
strain=AMB-1
null
Bacteria
Proteobacteria
Alphaproteobacteria
Rhodospirillales
Rhodospirillaceae
Magnetospirillum
Magnetospirillum magneticum
true
Eubacteria
Proteobacteria
1
1
0.9
1
4,967,148
1
65.09
4,967,148
1
4,628
1,522,305
90.298759
99
0
0
360
yes
yes
yes
20
high
2,542,410
0
GTCGGCCGGGCTGAGGCGAGGGGAGGCATGGCGGATTGATCGTCCTCTTTACCGACTTTGGTGGCCATGGCCCCTATCTCGGGCAGATGGAGGTGGTTATCCGTCAGATCCTGCCATCCGAGCCGGTGGTCAATCTGGTGGCCGACGCAC
56Magnetospirillum magneticum AMB-1
G000010185
ASM1018v1
GCF_000010185.1
PRJNA224116
SAMD00060918
null
2008/02/14
Kitasato Institute for Life Sciences
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/185/GCF_000010185.1_ASM1018v1
641,522,627
RS_GCF_000010185.1
Monoisolate
Complete Genome
Full
representative genome
Major
334,413
1,260
Finegoldia magna ATCC 29328
strain=ATCC 29328
null
Bacteria
Firmicutes
Tissierellia
Tissierellales
Peptoniphilaceae
Finegoldia
Finegoldia magna
true
Eubacteria
Firmicutes
1
0.995
1
1
1,986,740
2
32.07
1,797,577
1
1,846
611,719
90.720879
99.39
0
0
282
yes
yes
yes
20
high
677,950
0
ATTATAATTTCATTGATATTGGGAAAGTTTATAATCAAGATTTTGAGAAAAAAACATATTGGTCAAGAAATCAGAGATGATGGGCCCAAATCACATTATTCAAAAGCCGGTACACCGACTATGGGAGGTATTATATTTATAATATCTACA
39Finegoldia magna ATCC 29328
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
8,732,850
1
CTTTCTCCCGACACCTTCGAGCCTCTATTTGTCTCCAGTAGCTGTCCCAGAAATCATGGGTGGGAGCATTCAAAAATGTGGTTCCAGAGGTCCCCTTGCCCTAGCCCAAAAGGCTGCCTGAGCTGGGGATCCCTTCCTTACCCCCCAATC
120homo sapiens
G000009985
ASM998v1
GCF_000009985.1
PRJNA224116
SAMD00061077
null
2005/12/01
Tokyo University of Agriculture and Technology, Japan
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/985/GCF_000009985.1_ASM998v1
637,000,155
RS_GCF_000009985.1
Monoisolate
Complete Genome
Full
representative genome
Major
342,108
84,159
Magnetospirillum magneticum AMB-1
strain=AMB-1
null
Bacteria
Proteobacteria
Alphaproteobacteria
Rhodospirillales
Rhodospirillaceae
Magnetospirillum
Magnetospirillum magneticum
true
Eubacteria
Proteobacteria
1
1
0.9
1
4,967,148
1
65.09
4,967,148
1
4,628
1,522,305
90.298759
99
0
0
360
yes
yes
yes
20
high
2,073,110
0
ACTCTGGCTGACGAGACCCGCCGTGAGTTCAGCAGGCGGATCGGTAAAATCAAGGAGACGCTTGGCAGCCATCAGGTTGACAAGGTGACCACCAAGCACATTGCGGATTTTCTTCGGCCGTGGACCGACGACGGGAAAAAGCGGATGGCC
56Magnetospirillum magneticum AMB-1
G000009865
ASM986v1
GCF_000009865.1
PRJNA224116
SAMD00061066
null
2005/06/30
NITE
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/865/GCF_000009865.1_ASM986v1
642,555,160
RS_GCF_000009865.1
Monoisolate
Complete Genome
Full
representative genome
Major
279,808
1,283
Staphylococcus haemolyticus JCSC1435
null
null
Bacteria
Firmicutes
Bacilli
Bacillales
Staphylococcaceae
Staphylococcus
Staphylococcus haemolyticus
true
Eubacteria
Firmicutes
1
0.989
1
1
2,697,861
4
32.78
2,685,015
1
2,600
785,925
85.820989
99.62
0
0
341
yes
yes
yes
20
high
356,330
0
TCTACAGTACCAGCTAATTTAACTGAGCTTTCTGGTAAACCGAATACATTTTGGAATGTATCGATCATACCTTGATCACCTTTTAATTTAGGTTTTGAAGCAGTGTATAATTCTTTAGCAAGTTTTAAGTTTGCAGCATAACGTAAAATC
89Staphylococcus haemolyticus JCSC1435
G000007745
ASM774v1
GCF_000007745.1
PRJNA224116
SAMN02603473
null
2004/09/17
Korea Advanced Institute of Science and Technology, Republic of Korea, Yuseong-gu
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/745/GCF_000007745.1_ASM774v1
637,000,156
RS_GCF_000007745.1
Monoisolate
Complete Genome
Full
representative genome
Major
221,988
157,673
Mannheimia succiniciproducens MBEL55E
strain=MBEL55E
null
Bacteria
Proteobacteria
Gammaproteobacteria
Pasteurellales
Pasteurellaceae
Basfia
[Mannheimia] succiniciproducens
true
Eubacteria
Proteobacteria
1
1
1
1
2,314,078
1
42.54
2,314,078
1
2,120
690,147
87.871627
100
0
0
329
yes
yes
yes
20
high
1,826,370
0
AAAATTCCACTTACCATCCCAATATTTACAAATATGTAAACAAAGAAAATTAATGTTAATGCGCCGGTTAGAATACGTCCGAACGCAGTTTCCGCATTAACACCGATAATTAGACCCCGAATAATAATAAAGAAATAAATTAACATCAAT
57Mannheimia succiniciproducens MBEL55E
G000009065
ASM906v1
GCF_000009065.1
PRJNA57621
SAMEA1705942
null
2003/05/06
Sanger Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/065/GCF_000009065.1_ASM906v1
637,000,351
RS_GCF_000009065.1
Monoisolate
Complete Genome
Full
reference genome
Major
214,092
632
Yersinia pestis CO92
strain=CO92
null
Bacteria
Proteobacteria
Gammaproteobacteria
Enterobacterales
Yersiniaceae
Yersinia
Yersinia pestis
true
Eubacteria
Proteobacteria
1
0.994
1
1
4,829,855
4
47.64
4,653,728
1
4,298
1,371,586
83.669593
99.82
0
0
372
yes
yes
yes
20
high
3,307,590
0
TTCGATGGGGACCTCACTCACCCTCCTGTGTCTGCTATTGCCCTTATTGATCACCACCCTCTCCTTGGGCGTTCCGTTCATTACCCTTATGCGCTGGCTCTCTATTGGTGGCATTGATATCTGGTTGAACCCGGAACTGCTGCCCGCGTT
116Yersinia pestis CO92 ASM906v1
G000007565
ASM756v2
GCF_000007565.2
PRJNA57843
SAMN02603999
null
2016/02/26
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/565/GCF_000007565.2_ASM756v2
637,000,222
RS_GCF_000007565.2
Multiisolate
Complete Genome
Full
reference genome
Major
160,488
303
Pseudomonas putida KT2440
strain=KT2440
null
Bacteria
Proteobacteria
Gammaproteobacteria
Pseudomonadales
Pseudomonadaceae
Pseudomonas
Pseudomonas putida
true
Eubacteria
Proteobacteria
1
1
0.9
1
6,181,873
1
61.52
6,181,873
1
5,584
1,861,131
88.706707
99.97
1.2
0
381
yes
yes
yes
20
high
2,380,820
0
GCGACACCGAGTGGGCCCCGAGCGTTGGTGTTGGCCTGAACTTCGGCGGTAGCCCGAAGCAAGCTGAAGCTGCTCCTGCTCCAGTTGCTGAAGTCTGCTCCGACTCCGACAACGACGGCGTGTGCGACAACGTCGACAAGTGCCCAGACA
78Pseudomonas putida KT2440
G000006965
ASM696v1
GCF_000006965.1
PRJNA57603
SAMEA3283068
null
2003/05/06
MELILO
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/965/GCF_000006965.1_ASM696v1
637,000,269
RS_GCF_000006965.1
Monoisolate
Complete Genome
Full
reference genome
Major
266,834
382
Sinorhizobium meliloti 1021
strain=1021
null
Bacteria
Proteobacteria
Alphaproteobacteria
Rhizobiales
Rhizobiaceae
Sinorhizobium
Sinorhizobium meliloti
true
Eubacteria
Proteobacteria
1
0.997
0.1
1
6,691,694
3
62.17
3,654,135
1
6,303
1,956,944
86.157242
99.28
0.31
0
373
yes
yes
yes
20
high
5,610,930
0
ATGCGACAGGCTCGGGCTGCCTTTTGATGAACGATTCCTGACCAGAGCGAAGGCGAACCCAAGGAGGCCGGATATTCGCAGTTATTATAAACCCGGCGACCGGGAACGCGTCGAACGGCTGTTCGGCGCCGAGATCGAACACTTCAAGTA
86Sinorhizobium meliloti 1021
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
8,178,600
1
TTAACCAGTTCTCACAGGCCCATACCATTTTACAAACCAGCTGTGTGACTTTGGCCTCCATGTCTTTGTTTCCTCATCTGTACAGCAGGGAAACAATGTCTAGGTTGTATAGGAATTTTCTAAGGACTAGAAATTACACACTCAAAGCAA
120homo sapiens
G000010605
ASM1060v1
GCF_000010605.1
PRJNA224116
SAMD00060929
null
2008/04/08
The University of Tokyo
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/605/GCF_000010605.1_ASM1060v1
641,522,653
RS_GCF_000010605.1
Monoisolate
Complete Genome
Full
representative genome
Major
455,632
1,911
Streptomyces griseus subsp. griseus NBRC 13350
strain=NBRC 13350
null
Bacteria
Actinobacteria
Actinobacteria
Streptomycetales
Streptomycetaceae
Streptomyces
Streptomyces griseus
true
Eubacteria
Actinobacteria
1
1
1
1
8,545,929
1
72.23
8,545,929
1
7,113
2,547,362
87.837226
99.84
0
0
357
yes
yes
yes
20
high
6,646,250
0
CGTCTACGGGCTCACCAAGAACATCACCACCTACAACCCGCTGCGGGTCGCCACCCACGAGTACGCCGCCATCGCCCGGGACGTCCGGGCCGCCGGCACCTGGGGCGAGCGGGCCGGCCGGGTGTTCCGCGGGCCCGGCTGGCAGCCGGC
96Streptomyces griseus subsp. griseus NBRC 13350
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
598,350
1
GGGATCTGCAGGTTGACCTCCCCCACCCGGGGCTATCTCCAGACCCTCTTTCCTCCCTGGGGAGATGGGGCAGTCCCCCGCAGGGCCAGCTGAAACCACCCCCATGCTGCTGCCGCCTGAGCGACGTGTGTGGGGAAGAACTTGGAGTGC
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
5,974,050
1
CGGTGCCCAGAACCCCTCCCTGTAAGGCGGGCGGAGCCTGCCCTTCCACCGAGGCCCCCATGACCCTCGCCCGCTGCCCACTGTGAGAACCAGGGGGTCTAGGAAGTCAGCTGCTGCACCCCTCGACGGCCGCTGGCCGCGAGTCCCCAG
120homo sapiens
G000008885
ASM888v1
GCF_000008885.1
PRJNA224116
SAMD00061100
null
2004/05/11
Yale Univ.
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/885/GCF_000008885.1_ASM888v1
637,000,338
RS_GCF_000008885.1
Monoisolate
Complete Genome
Full
representative genome
Major
36,870
51,229
Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis
null
null
Bacteria
Proteobacteria
Gammaproteobacteria
Enterobacterales
Erwiniaceae
Wigglesworthia
Wigglesworthia glossinidia
true
Eubacteria
Proteobacteria
0.99
0.986
1
1
703,004
2
22.48
697,724
1
646
209,912
87.974606
100
0
0
207
yes
yes
yes
20
high
385,710
0
AATCAAAGCAAACACTATAATAATTTATAAAGAAAAGACAAAAAAAAAAATTATAGAAGGATACGGAACACCAATAATTATTAAAAATCTAAAAAAAAATAATTCTTTCACTAGCATTTCATGCTTAAAAATGAAATATTATTTTTTTGA
109Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
9,924,000
1
GTTAACCTGCCTCTTGAAAGATTCAACCGGGTGTGGTGGCTCACGCCTGTAATCCCAGCACATTGGGAGGCCAAGGCAGGTGGATCACCTGAGGTCAGAAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAAT
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
951,000
1
TCCGCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAATAGCTGGGATTACAGGCACCCGCCACCACACCTGGCTAATTTTTATATTTTTAGTAGAGTCGGGGTTTCACCATGTTGGCCAGCCTGGTCTTGAACTCCTGACTTC
120homo sapiens
G000009345
ASM934v1
GCF_000009345.1
PRJNA57741
SAMEA1705958
null
2007/01/12
Sanger Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/345/GCF_000009345.1_ASM934v1
640,069,335
RS_GCF_000009345.1
Monoisolate
Complete Genome
Full
reference genome
Major
393,305
630
Yersinia enterocolitica subsp. enterocolitica 8081
strain=8081
null
Bacteria
Proteobacteria
Gammaproteobacteria
Enterobacterales
Yersiniaceae
Yersinia
Yersinia enterocolitica
true
Eubacteria
Proteobacteria
1
0.998
0.9
1
4,683,620
2
47.22
4,615,899
1
4,253
1,352,606
85.086813
99.95
0
0
373
yes
yes
yes
20
high
3,932,500
0
CGCGCCGCTGGTCCAGACCTGAATAATGTTGTTGGTATAGGGGCTGAGTTTGTCATTATCCGCCCAAAGCGCGTTACCGCTGGCATAGCTTTTACCCTGATCAAACAATTCACTATGATTGACCTGCTGACATTTACTCACACAAGCCTG
115Yersinia enterocolitica subsp. enterocolitica 8081
G000011005
ASM1100v1
GCA_000011005.1
PRJDA20361
SAMD00060931
null
2009/12/25
NITE
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/011/005/GCA_000011005.1_ASM1100v1
2,505,679,075
GB_GCA_000011005.1
Monoisolate
Complete Genome
Full
na
Major
304,371
570,267
Methanocella paludicola SANAE
strain=SANAE
null
Archaea
Euryarchaeota
Methanomicrobia
Methanocellales
Methanocellaceae
Methanocella
Methanocella paludicola
true
Archaea
Euryarchaeota
1
1
0.8
0.9
2,957,635
1
54.92
2,957,635
1
3,055
877,570
87.405714
100
0.65
0
198
no
yes
yes
17
medium
673,400
0
CCTCAGGTACTCGTTAATCTGCCTGTCCCTGCCGATGACGCACTTGGCCGTGTCCACATCCCGGTCGTCCAGCGACCGCACGGCCTCATCGATCGACAGGCCGACGTAGCCCATCATGAGCAATACATCCGCCTTTATACCATCCACACG
58Methanocella paludicola SANAE
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,313,900
1
TGGTCACTGTTTGGGTCCGCACTGCCTTTGTGAGCTGTAACGCTCACCACGAAGGTCTGCGGGTTCACTGCTGAGGCCAGTGAGAGCCCGAGCCCACCAGGAGGAATGAACAACTCCGGATGGGAGAAACGAACAACTCCAGATCCGCCG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,036,350
1
TCTATCTATCTATCTATCTAATCTATCTAAATGCTAATTTCATCTATTAGCTATCTATCTATCATCTATCTAATATAGCTATCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCTATCATATCTCTCTCTC
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
8,025,300
1
TATGAAAGCAGGATTTTTTTCACAAAGCTTTTATACAGAGAACAACTGGCCAGACATGGTGGCCCATGCCTGTAATCCTAGCACTTTGGGAGTCTGAGACAGGAGGATTACTTAAGACCAGGAGTTTGAAATCAGCCCTGGCAACAAAGT
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,213,500
1
CCTTCTTTGAGTTGTATTTTTAAGAGACTTCATTCCAGAGAAAGACACAGCTACTATTTCTGTGTTTTTCCTTCTTCTGCAAGAGGAGAGTCAATGCCAACTCTTCCCCTAGGGTTACTGTGAGAACGGCATGAGACAATTCCTGTGAGA
120homo sapiens
G000009985
ASM998v1
GCF_000009985.1
PRJNA224116
SAMD00061077
null
2005/12/01
Tokyo University of Agriculture and Technology, Japan
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/985/GCF_000009985.1_ASM998v1
637,000,155
RS_GCF_000009985.1
Monoisolate
Complete Genome
Full
representative genome
Major
342,108
84,159
Magnetospirillum magneticum AMB-1
strain=AMB-1
null
Bacteria
Proteobacteria
Alphaproteobacteria
Rhodospirillales
Rhodospirillaceae
Magnetospirillum
Magnetospirillum magneticum
true
Eubacteria
Proteobacteria
1
1
0.9
1
4,967,148
1
65.09
4,967,148
1
4,628
1,522,305
90.298759
99
0
0
360
yes
yes
yes
20
high
2,015,260
0
CATCGATCTGGTCAAGGCGGTCAAGGCCATCCGGCCCGATCTGCCCTGCCTGATCTGCACCGGCTATCCCGAGGCCCTGGACGAGGCCGCCCTGACCAAGGCCGGGGTCTTCGCCCTGCTGCACAAGCCGGTGGACTTCCCCCATTACTT
56Magnetospirillum magneticum AMB-1
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,903,250
1
CCACCAGTTAAACTCTGAATCGCACAGAAAGAAAATGCAAAAATGTTCCTCACTAAGATAATTATCATAAAAAATCTTTTATTCCAACCCCAGCTCAATGCAGCCAGCCCCTTATCACTGCAGGGACTTGGAGGAGGCTCTCGAGCTCCT
120homo sapiens
G000009745
ASM974v1
GCF_000009745.1
PRJNA224116
SAMD00061075
null
2003/10/03
NHRI, Taiwan
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/745/GCF_000009745.1_ASM974v1
637,000,337
RS_GCF_000009745.1
Multiisolate
Complete Genome
Full
representative genome
Major
196,600
672
Vibrio vulnificus YJ016
strain=YJ016
null
Bacteria
Proteobacteria
Gammaproteobacteria
Vibrionales
Vibrionaceae
Vibrio
Vibrio vulnificus
true
Eubacteria
Proteobacteria
1
0.996
1
1
5,260,086
3
46.68
3,354,505
1
4,639
1,553,759
87.03525
100
0.14
0
369
yes
yes
yes
20
high
2,480,270
0
GAAAACCTCTATGCTAAAGGGCTGGTCTACCAGCCCTTTTTCTTTATTTTCCCGTCTATATCTCACTATTTCAGAGCACAACTGTTTGCTGGATTGGCCATTTCATTACACGCGTGTACGCTCAAATTTCAAAACAAGCCGATAACAAAT
108Vibrio vulnificus YJ016
G000008885
ASM888v1
GCF_000008885.1
PRJNA224116
SAMD00061100
null
2004/05/11
Yale Univ.
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/885/GCF_000008885.1_ASM888v1
637,000,338
RS_GCF_000008885.1
Monoisolate
Complete Genome
Full
representative genome
Major
36,870
51,229
Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis
null
null
Bacteria
Proteobacteria
Gammaproteobacteria
Enterobacterales
Erwiniaceae
Wigglesworthia
Wigglesworthia glossinidia
true
Eubacteria
Proteobacteria
0.99
0.986
1
1
703,004
2
22.48
697,724
1
646
209,912
87.974606
100
0
0
207
yes
yes
yes
20
high
240,630
0
AAAAAAATTTGACGAATATCTTCTTGTGGAGTAAAATTCATGTTTCCTTTTATGATTATATGAGAAATAGGGAATAGAGATAATATATTTGAAATATTTAAAATTTTTAAAATAAACCAAAATATGCTAGATAAAGATGAAAAAAATAAA
109Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
8,289,150
1
GCAAGCAAATCGGCAAAAACAAACTGTATTGTCAGAATCTGTTTTTAACATATATTTCTAAAATGCAAAACCCCAAATTGGGCCAGGTGCAGTGGCTCACACCTATAAATCCAGCACTTTGGGAGGCCAAGGCAAGAGAATCACTTGAGC
120homo sapiens
G000010165
ASM1016v1
GCF_000010165.1
PRJNA224116
SAMD00060942
null
2009/04/01
National Institute of Technology and Evaluation
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/165/GCF_000010165.1_ASM1016v1
643,692,011
RS_GCF_000010165.1
Monoisolate
Complete Genome
Full
representative genome
Major
358,681
1,393
Brevibacillus brevis NBRC 100599
strain=NBRC 100599 (= 47)
null
Bacteria
Firmicutes
Bacilli
Bacillales
Paenibacillaceae
Brevibacillus
Brevibacillus brevis
true
Eubacteria
Firmicutes
1
1
1
1
6,296,436
1
47.27
6,296,436
1
5,917
1,875,522
87.757979
99.73
0.27
0
381
yes
yes
yes
20
high
4,695,990
0
AATGAGCTTGGAAGCCTCTTGCAATGCCCATGCTGCATCGTACCTTGCATAGCATTCCACTGGCTCCCAGTACCATTGCTCCGTATAACCCTCAATCAAAAATGTGTGCGTGCCATCCAATACGGTTGTCCGAAGCAATGAGAAGTGAAT
15Brevibacillus brevis NBRC 100599
G000007385
ASM738v1
GCF_000007385.1
PRJNA224116
SAMN02603680
null
2005/02/02
NIAB, Rural Development Administration
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/385/GCF_000007385.1_ASM738v1
637,000,346
GB_GCA_000007385.1
Multiisolate
Complete Genome
Full
representative genome
Major
291,331
347
Xanthomonas oryzae pv. oryzae KACC 10331
null
null
Bacteria
Proteobacteria
Gammaproteobacteria
Xanthomonadales
Xanthomonadaceae
Xanthomonas
Xanthomonas oryzae
true
Eubacteria
Proteobacteria
1
1
0.9
1
4,941,439
1
63.69
4,941,439
1
4,831
1,427,680
85.113992
99.82
0
0
355
yes
yes
yes
20
high
3,825,510
0
CCCGTTGGCATTCTCGTTGCTGCCGCGCTGCCATGCGCAGTACGGATCTGCGAAATAGAAATCGCTCTGCAAGCAGGCGGCAATGAGCCGATGATCGGCGAACTCCTTGCCGTTGTCGGCGGTGAGCGTGTGAACTGTATGGCGCAGGAC
113Xanthomonas oryzae pv. oryzae KACC 10331
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
1,688,850
1
ACCCAGGGAGAAGCCTGGCCACTTGTGAGTGCAGGTCGTCCTTGGACACACACTTGGAGGAATCGGAAGGAACAGGACACGCAGCCTTATGTTCCTGTCAGCCCTTCCTGCACATATGCCCTGTCTCAGGGGGCTGCTGGCCTCTGCCAG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
5,710,950
1
GCCAAAGAGCAACTGATGCCTCAGTGAAGTTTGAAAGAAACTCTGCTTTCTGTGACGGCAGAGAAGAAATATGCAAGCAATTCTGCTTCAAAGAAATTTGCATAGAAATGGAAAAATGCCAGAGCCTTTAACACAAGTGAAATTGCAAAG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
1,378,050
1
CACACGGCTACACTGAGGTACACACAACCACAGCCGGAGACCATCCACAGAGCTGGGCCCCACTCAGCCCTCAATGCCCGACAGACACGCCTGGGCCCTTTCTGTCAAGTTTCCAAGGCCACTGAGAGGCTGTAGTAGGACGATGCCGGA
120homo sapiens
G000010605
ASM1060v1
GCF_000010605.1
PRJNA224116
SAMD00060929
null
2008/04/08
The University of Tokyo
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/605/GCF_000010605.1_ASM1060v1
641,522,653
RS_GCF_000010605.1
Monoisolate
Complete Genome
Full
representative genome
Major
455,632
1,911
Streptomyces griseus subsp. griseus NBRC 13350
strain=NBRC 13350
null
Bacteria
Actinobacteria
Actinobacteria
Streptomycetales
Streptomycetaceae
Streptomyces
Streptomyces griseus
true
Eubacteria
Actinobacteria
1
1
1
1
8,545,929
1
72.23
8,545,929
1
7,113
2,547,362
87.837226
99.84
0
0
357
yes
yes
yes
20
high
6,593,210
0
TGGCCCGCACCCCCGGCGTCATCGGGCTCAAGGACGGCCACGGCGACCTCGACCTCATGCAGCGCATCGTCAGCGCGGTCCGCACCCACCGTCCCGGCGGCGACTTCCTCTACTTCAACGGACTGCCCACCGCCGAACTCACCGGCCCCG
96Streptomyces griseus subsp. griseus NBRC 13350
G000009065
ASM906v1
GCF_000009065.1
PRJNA57621
SAMEA1705942
null
2003/05/06
Sanger Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/065/GCF_000009065.1_ASM906v1
637,000,351
RS_GCF_000009065.1
Monoisolate
Complete Genome
Full
reference genome
Major
214,092
632
Yersinia pestis CO92
strain=CO92
null
Bacteria
Proteobacteria
Gammaproteobacteria
Enterobacterales
Yersiniaceae
Yersinia
Yersinia pestis
true
Eubacteria
Proteobacteria
1
0.994
1
1
4,829,855
4
47.64
4,653,728
1
4,298
1,371,586
83.669593
99.82
0
0
372
yes
yes
yes
20
high
1,258,530
0
AACCTATATCGTGATGCATTAGATCACGGTGACTGTGTGGTGGAAGAGTGGCGTCCGATGAATTTGCAGTCCTTCACTTGGTCACCGTATTTGAACCATGAGTGGGATGAAGCGTATCCAAGCAAAGTTGAAATGAAACGCCTGCAAGAG
116Yersinia pestis CO92 ASM906v1
G000007765
ASM776v1
GCF_000007765.1
PRJNA57631
SAMN02603970
null
2005/07/22
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/765/GCF_000007765.1_ASM776v1
637,000,086
RS_GCF_000007765.2
Monoisolate
Complete Genome
Full
reference genome
Major
227,377
777
Coxiella burnetii RSA 493
strain=RSA 493
null
Bacteria
Proteobacteria
Gammaproteobacteria
Legionellales
Coxiellaceae
Coxiella
Coxiella burnetii
true
Eubacteria
Proteobacteria
1
0.995
0.9
1
2,032,674
2
42.6
1,995,281
1
2,058
613,036
88.849515
100
0
0
308
yes
yes
yes
20
high
1,469,520
0
CGTTTCAGGAAAAGGATAATTGGGCAAATAACGATTATTCACGCCCTCCGCTTGCATTTCATCAACGTGATCGCTTTCATACGACCATAAGCGGACTTTCTGGCCTTTGCGTGCTAATACTAAAGCAAGGGCGGTCCCCCACGAACCGGC
32Coxiella burnetii RSA 493 ASM776v1
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
5,735,400
1
CATTTAAGGTGACGGGACCCAAGCCCTCACCAGGCAGCAGATGCAGGGCTGGTAGGTTGGAGAGATACCTAGTGTAACCAGCAGGTGGCTGGGGTCCGGGGGGTAGGCATGGTGGGAGGTGGCAGGGCTGGGGCGCAAATCAAGAGCATG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
5,861,400
1
CCGCACAGAACACACCTTGGGAACGTGGGGCTCCCAGTGCTTGGGAACCACAGGCAAATAATATGGGAAAATATTTCCACCGCACTTTGACTGAGAGTGAATCTGACAACCTGCTTTTGGGAATAAAGATTTCCTGTTGGATTCAGCTAG
120homo sapiens
G000006965
ASM696v1
GCF_000006965.1
PRJNA57603
SAMEA3283068
null
2003/05/06
MELILO
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/965/GCF_000006965.1_ASM696v1
637,000,269
RS_GCF_000006965.1
Monoisolate
Complete Genome
Full
reference genome
Major
266,834
382
Sinorhizobium meliloti 1021
strain=1021
null
Bacteria
Proteobacteria
Alphaproteobacteria
Rhizobiales
Rhizobiaceae
Sinorhizobium
Sinorhizobium meliloti
true
Eubacteria
Proteobacteria
1
0.997
0.1
1
6,691,694
3
62.17
3,654,135
1
6,303
1,956,944
86.157242
99.28
0.31
0
373
yes
yes
yes
20
high
5,451,810
0
CGGAGCCGATGGCAAGGTCTCCGGTGCTGCACCGGATGTCGCCCGCGAGATCTTCAAGCGGCTCGGCGTTGCCGACGTCGTCGCCTCCATTTCCGAATACGGCGCGATGATCCCGGGCCTGCAGGCCGGGCGCCACGACGCGATCACCGC
86Sinorhizobium meliloti 1021
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
1,055,550
1
GCCGCTGTCACAGAAGCCTGGCACAGATTCTCTCTGGTTCTTATGTTTCATTCATGCAGCCATTCAGTCAAAGCTGAAGCTGGTGGGGTCCTGGCCAAACAGGACGCAGCAGTGCACCACCTGGGGGCTGCCCTCAGAGGCCCCGCGAGG
120homo sapiens
G000007345
ASM734v1
GCF_000007345.1
PRJNA224116
SAMN03081414
null
2002/04/03
Broad Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/345/GCF_000007345.1_ASM734v1
638,154,508
RS_GCF_000007345.1
Monoisolate
Complete Genome
Full
representative genome
Major
188,937
2,214
Methanosarcina acetivorans C2A
strain=C2A
null
Archaea
Euryarchaeota
Methanomicrobia
Methanosarcinales
Methanosarcinaceae
Methanosarcina
Methanosarcina acetivorans
true
Archaea
Euryarchaeota
0.98
1
0.8
0.9
5,751,492
1
42.68
5,751,492
1
4,884
1,470,904
75.340086
99.84
0.03
0
229
no
yes
yes
18
medium
2,774,590
0
ATAATTATCTAAGGGAGTCTGCCAAAGATACTCTTTGCTTTTCGCTCTGGAGATTTGGGAGTGTATAATCCACTTTATGGACTTATAGAAGCTCATAGAGATGTAGAAGCCCGCTATATTATCTCAGGGTTCGGAAAAAAGGGTCAATTT
61Methanosarcina acetivorans C2A
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
6,477,150
1
TTATTGTCCTCCATTTACCGATGAGGAACTGGCACTTAGAGAGCTCAAGTGACTTTCCTGGCCTTTGGGAAATGTTGGCATGGTGGGGACAGGGTGGGGCATCATGTGTGTTGATTATCTTCCCTATGTTAGACACTATGCTGGACAGTT
120homo sapiens
G000010425
ASM1042v1
GCF_000010425.1
PRJNA224116
SAMD00061080
null
2006/12/05
Gifu University, Life Science Research Center, Japan
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/425/GCF_000010425.1_ASM1042v1
639,633,010
RS_GCF_000010425.1
Monoisolate
Complete Genome
Full
representative genome
Major
367,928
1,680
Bifidobacterium adolescentis ATCC 15703
strain=ATCC 15703
null
Bacteria
Actinobacteria
Actinobacteria
Bifidobacteriales
Bifidobacteriaceae
Bifidobacterium
Bifidobacterium adolescentis
true
Eubacteria
Actinobacteria
1
1
1
1
2,089,645
1
59.18
2,089,645
1
1,683
614,966
86.722338
100
0
0
284
yes
yes
yes
20
high
643,630
0
GCAGACAACAAGCCTGAAGTCGCGGTGATCATGGGATCGGCAAGCGATTGGGAGACCATGAAGCACGCATGCGAGATGCTCGACCAGTTCGAGGTGCCGTACATGAAGCAGGTGATTTCCGCGCACCGCACCCCGGAACTGATGGGTGAG
12Bifidobacterium adolescentis ATCC 15703
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
1,623,900
1
AACCCGGGAGGCGGAGCTTGCAGTGAGCCGAAATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAGAAAAAAAAAAAAAAAAACAAAAAGAACGCCACCAGAGGCTGGGGCTGCTGGCTCACGCCTGTA
120homo sapiens
G000007625
ASM762v1
GCF_000007625.1
PRJNA224116
SAMN02603289
null
2003/02/05
Gottingen Genomics Laboratory
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/625/GCF_000007625.1_ASM762v1
637,000,080
RS_GCF_000007625.1
Monoisolate
Complete Genome
Full
representative genome
Major
212,717
1,513
Clostridium tetani E88
strain=Massachusetts substr. E88
null
Bacteria
Firmicutes
Clostridia
Clostridiales
Clostridiaceae
Clostridium
Clostridium tetani
true
Eubacteria
Firmicutes
1
0.997
1
1
2,873,333
2
28.64
2,799,251
1
2,799
856,294
87.797934
98.28
0.14
0
315
yes
yes
yes
20
high
2,598,570
0
TTCACAACTATCTTTTGCTGGTATTTTCACTCTTACTCTCATACTAATTATAGGATCTAACACCGCTCCAACAGTATTAGTTAATGGCTTATCATTTTCTATAACTTCAGGTCTATCTAAGTCATTACATCTTCCTATAAATTTAGCTCT
30Clostridium tetani E88 Massachusetts substr. E88
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
3,132,150
1
TGAGTTAATGCTGAAATAAGACTTTGGGGGACTGTTGGGAGGGCATGATTGGTTTTGAAATGTAAAAAGGACATGAGATTTAGGAGGGGCCGGGGTAGAATGATATGGTTTAGCTGTGTCCCCACCCAAATCTCATCTCGAATTGTAATC
120homo sapiens
G000010065
ASM1006v1
GCF_000010065.1
PRJNA224116
SAMD00061073
null
2004/12/16
Nagoya University, Japan
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/065/GCF_000010065.1_ASM1006v1
637,000,307
RS_GCF_000010065.1
Monoisolate
Complete Genome
Full
representative genome
Major
269,084
32,046
Synechococcus elongatus PCC 6301
strain=PCC 6301
null
Bacteria
Cyanobacteria
null
Synechococcales
Synechococcaceae
Synechococcus
Synechococcus elongatus
true
Eubacteria
Cyanobacteria
1
1
0.9
1
2,696,255
1
55.48
2,696,255
1
2,691
815,460
89.10092
99.73
0
0
342
yes
yes
yes
20
high
618,150
0
CGGATCTGTTGTCTGCTGACCTGATCCTGTTTGTGATTCAGGGGGACCTCAGCGCCTCCGAGCTGCGCTGTTTGCAGAGCCTCTTACCCCAGTCCAATGTTCTGGTGATTTGCAACAGTACGGCGACCGCTGCAGAAGCCGAGCGAGAGC
100Synechococcus elongatus PCC 6301
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,820,750
1
GTGGAAAACATAGCCGAGAAGACAGGACCTGTGTAGCCAAGAATCAGTGGCACAGAGTAACCAGGAAACATTGATACAGGGTAGACAGGAAACAGCGACACAGTGGAGCCAGGAAACAGTGACACAGGGTAGGCAGAAAACAGTGACACA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,072,500
1
TTTAGGATCTGTTCTTCACTTAAATGGGATGGGATGGCATCATCAAAATATCCGGCCCTCTTAATGAATGCCAAAATGACTTCTGGCCTATCTAAGAGATGTCCTCCCTTCATAGTAGATGGCATGCCCTGCAGTGTCATCAATTGTTGT
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,562,450
1
CCAGGAAAGGGTCCCAGGCAGGGATCTCTCTGCAGAGGCACCTCTGCCACCCTGCACACCCCGGAGAGCGCCATCCCTGCAGTGTAAGTCACCTGGGGCTTTGTGGTCAGGGTGCTCTTCCTCTGAGTCCTGCTTCTGCCTCTAAGGACA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
5,298,600
1
AGCCAGAGCCCTGCACTCTTGGGAAGTGAAGGATGTGATGTTTACTCATTCCCTCCCTGGCCATTTCTCATGCTCTGTCTTCAGGAACCGGGAAAGAGAGATGGATGGGCCCAAGGCCGCCTCGCATGCTGCACCGGGGACACGCACCCA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
6,290,700
1
CCACTGTGCCCAGTTATTTTTTTTTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGTCCGCCTTGGCCTCTGGAAGTGCTGGGATTACAGGCTTGAGCCACTGCA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,373,150
1
GTCCTGAACATGCTTTTCCGGAGGGAGTCCCTTGGTTTGGTCACTCTCCAGGGCTTCTCTGTGTGGCTTGGAGGGGCCTGGGAGGACTGGCCTAGGCAGCTGGGTAGGAGCCCCCCTTTCTTCTCTGCATGTCCCAGGGGCCTTCTGGGG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
8,557,650
1
ATGCCTGGCTAATTTTTGGATTTTTAGTAGAGATGAGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGATTTCAGGTGATCAGGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTGCAGGCGTGAGCCACCGCTCCCA
120homo sapiens
G000010625
ASM1062v1
GCF_000010625.1
PRJNA224116
SAMD00060936
null
2008/01/24
Kazusa DNA Research Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/625/GCF_000010625.1_ASM1062v1
641,522,640
RS_GCF_000010625.1
Monoisolate
Complete Genome
Full
representative genome
Major
449,447
1,126
Microcystis aeruginosa NIES-843
strain=NIES-843
null
Bacteria
Cyanobacteria
null
Chroococcales
Microcystaceae
Microcystis
Microcystis aeruginosa
true
Eubacteria
Cyanobacteria
1
1
0.9
1
5,842,795
1
42.33
5,842,795
1
5,605
1,591,543
80.239081
99.89
0.51
25
350
yes
yes
yes
20
high
5,200,910
0
AAAGCCGTTAACAGCGTCATATTCAAAGTAGCGGTTGACGTTTGGCTAATATTTTTCAGGTTTTGGCTTAATTCTGGACTTATTTTAAATGTACAATTATTGCCTTTAAACGTTTGTATGGGAGGACGAGGATGATCAGTGGGAATTTCC
64Microcystis aeruginosa NIES-843
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
6,150,150
1
GGCCTTGAACTCCTGATCTCAGGTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCTGGCCGATTTTTTTTTTTTTCTTCTTACAAGATGACGCCTTCCCTATAGGCTGCTTTGAGAAAGCTGCA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
9,714,900
1
AGCCTGGGCAACAGGGTGAGACTCTGTCTCAAAATAAATAAATAAGTAAGTAAGTAAGTAAAAAACAAAAGTAAAGAGCAGGTTTGGCGCTCTGAGCCCTCTCCAGTTGAGTTCTTACCCCATCTTTTTAAGGGCCTTCTTGACAAATCC
120homo sapiens
G000008765
ASM876v1
GCF_000008765.1
PRJNA57677
SAMN02603243
null
2002/11/22
Genome Therapeutics
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/765/GCF_000008765.1_ASM876v1
637,000,076
RS_GCF_000008765.1
Monoisolate
Complete Genome
Full
reference genome
Major
272,562
1,488
Clostridium acetobutylicum ATCC 824
strain=ATCC 824
null
Bacteria
Firmicutes
Clostridia
Clostridiales
Clostridiaceae
Clostridium
Clostridium acetobutylicum
true
Eubacteria
Firmicutes
1
0.998
0.1
0.9
4,132,880
2
30.93
3,940,880
1
3,896
1,211,240
86.343567
100
0
0
345
yes
yes
yes
19
high
1,921,400
0
GGGATACAAATCAAAAATTATAGGAAGGCTTGGGGAAGGAGTAGTTACGCCTGCACATTAGTTACTAATATTATTTTTATGTAAGTAAAACTTAAGAAGATATTCAGAGAACTTATTAATCAAATTATATTTAGAGAACTAAAAAACTAT
29Clostridium acetobutylicum ATCC 824
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
148,650
1
CATGTTCGTGTGGAGGAATGTGGAAGGTCACTCTTCGGCCGTGTTCTCCTGGTACTCCATCCCCTTCCTGACCCCTCCCTGCAGCCACACGAGGCCCAGCAACCTGCCAGTCACTCAGTGGCCTCCAACCAGAGAAAACAACCTGCCAAG
120homo sapiens
G000006965
ASM696v1
GCF_000006965.1
PRJNA57603
SAMEA3283068
null
2003/05/06
MELILO
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/965/GCF_000006965.1_ASM696v1
637,000,269
RS_GCF_000006965.1
Monoisolate
Complete Genome
Full
reference genome
Major
266,834
382
Sinorhizobium meliloti 1021
strain=1021
null
Bacteria
Proteobacteria
Alphaproteobacteria
Rhizobiales
Rhizobiaceae
Sinorhizobium
Sinorhizobium meliloti
true
Eubacteria
Proteobacteria
1
0.997
0.1
1
6,691,694
3
62.17
3,654,135
1
6,303
1,956,944
86.157242
99.28
0.31
0
373
yes
yes
yes
20
high
6,246,370
0
GGCCCCTCATCCCGCTGCCGCGACCTTCTCCCCGTCCCTGACGGGGAGAAGGGACAAGCCTCACGGCCACCATTCCCCCTCGAGCGGCCGAGGGGCCGGTGCCTCGTTCGGACGAGCCCTAACCCGGCAGCGTCACGACCAGCGGCCCGC
86Sinorhizobium meliloti 1021
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
7,440,000
1
ACCTCCCACCAGGTCCCTCCCAGGACACACGGGGATTATGGGAGCTACAGTTCAAGATGAGATTTGGGTGGGGACACAGCCAAAGCGTATCAGCGTAGCTTTTTGAAAGGTAATTAAAAAATATTTTTTAGTACTGGGCTTACGCCTGTA
120homo sapiens
G000010645
ASM1064v1
GCF_000010645.1
PRJNA224116
SAMD00060940
null
2008/11/12
RIKEN Genomic Sciences Center (GSC)
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/645/GCF_000010645.1_ASM1064v1
643,348,524
RS_GCF_000010645.1
Monoisolate
Complete Genome
Full
representative genome
Major
511,995
511,435
Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2
null
null
Bacteria
Bacteroidetes
Bacteroidia
Bacteroidales
null
Candidatus Azobacteroides
Candidatus Azobacteroides pseudotrichonymphae
true
Eubacteria
Bacteroidetes
1
0.968
1
1
1,224,919
5
32.95
1,114,206
1
1,089
310,957
74.780128
89.51
1.09
0
252
yes
yes
yes
20
medium
710,190
0
GAAAGGGAAAATTGTGTTTGATTCACCTAATGAAATTGATTTCATAGATATTTCTTTGGAAAATTTAATAGCAAGGGTCAGTTGTAAAAAGATTTTAAGATATGGGAATGGTTCGAAAACTGTTGTATTGGTTGATTGTGGAGTAAAGCA
19Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2
G000007465
ASM746v2
GCF_000007465.2
PRJNA57947
SAMN02604090
null
2011/09/01
Univ. Oklahoma
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/465/GCF_000007465.2_ASM746v2
637,000,288
RS_GCF_000007465.2
Monoisolate
Complete Genome
Full
reference genome
Major
210,007
1,309
Streptococcus mutans UA159
strain=UA159
null
Bacteria
Firmicutes
Bacilli
Lactobacillales
Streptococcaceae
Streptococcus
Streptococcus mutans
true
Eubacteria
Firmicutes
1
1
0.9
1
2,032,925
1
36.83
2,032,925
1
1,897
591,301
85.692487
100
0
0
308
yes
yes
yes
20
high
1,169,220
0
CTTAAATAAGAATCCATTTTCCCAGCTTCTGTCAAAGAAATCAAGTAATTGCCAATTTCTTTTTTAGGACTATGCAAATAATCTGCACCATAAGCTACTCCCATCAATTGAGCACCCAGACAGACGCCAACAATGATTTTCTCAGACTTA
92Streptococcus mutans UA159
G000008525
ASM852v1
GCF_000008525.1
PRJNA57787
SAMN02603995
null
1999/12/22
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/525/GCF_000008525.1_ASM852v1
637,000,132
RS_GCF_000008525.1
Monoisolate
Complete Genome
Full
reference genome
Major
85,962
210
Helicobacter pylori 26695
strain=26695
null
Bacteria
Proteobacteria
Epsilonproteobacteria
Campylobacterales
Helicobacteraceae
Helicobacter
Helicobacter pylori
true
Eubacteria
Proteobacteria
1
1
1
1
1,667,867
1
38.87
1,667,867
1
1,579
514,109
90.817493
99.36
0
0
275
yes
yes
yes
20
high
1,306,110
0
CCAACATCTGCCCTTAAGCGCAACGCTCATTTTAAAGCAAGAGGCCATAAGCGTTGGGGGCGATTTTGCCACGCCAAGAGATTGTATTTTAGCCAAAGAGCCTTTTTATGATGGGGTGTTGATTGCGAGCGCTAAGCAATTAGAACGCCT
48Helicobacter pylori 26695 ASM852v1
G000009205
ASM920v1
GCF_000009205.1
PRJNA57679
SAMEA1705932
null
2006/09/20
Sanger Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/205/GCF_000009205.1_ASM920v1
640,069,308
RS_GCF_000009205.1
Monoisolate
Complete Genome
Full
reference genome
Major
272,563
1,496
Clostridioides difficile 630
strain=630
null
Bacteria
Firmicutes
Clostridia
Clostridiales
Peptostreptococcaceae
Clostridioides
Clostridioides difficile
true
Eubacteria
Firmicutes
1
0.998
0.9
1
4,298,133
2
29.06
4,290,252
1
3,829
1,209,268
82.891874
99.51
0.37
0
340
yes
yes
yes
20
high
1,790,620
0
TATGTTATTGAGCCTTTTAAGACAAGTAATTTTATTGATACCAGCAGTATTAATTCTTCCTACATTCTTAGGTTTACAGGGTGTATGGACAGCTCAACCAGTGTCTGATTTTATAGCTACAGTAATTACAGGTATAGTTGTATTTAGAGA
28Clostridioides difficile 630 ASM920v1
G000011005
ASM1100v1
GCA_000011005.1
PRJDA20361
SAMD00060931
null
2009/12/25
NITE
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/011/005/GCA_000011005.1_ASM1100v1
2,505,679,075
GB_GCA_000011005.1
Monoisolate
Complete Genome
Full
na
Major
304,371
570,267
Methanocella paludicola SANAE
strain=SANAE
null
Archaea
Euryarchaeota
Methanomicrobia
Methanocellales
Methanocellaceae
Methanocella
Methanocella paludicola
true
Archaea
Euryarchaeota
1
1
0.8
0.9
2,957,635
1
54.92
2,957,635
1
3,055
877,570
87.405714
100
0.65
0
198
no
yes
yes
17
medium
2,535,520
0
TGCCATTGGTCACTACCTGTGTCCTCATGAGCTTTCCGGCGCCGACGTTAAAAGAGCTCCATTCCGAGGTGTTCACCAGGATGTTCTGCGTCCAGTTCGAATAGCTGGAGTCGGGGCCGAACTCCTCGTCATAGAAGCCGAACTGCCCAC
58Methanocella paludicola SANAE
G000009365
ASM936v1
GCF_000009365.1
PRJNA224116
SAMEA3138202
null
2006/07/24
German Research Centre for Biotechnology
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/365/GCF_000009365.1_ASM936v1
637,000,004
RS_GCF_000009365.1
Monoisolate
Complete Genome
Full
representative genome
Major
393,595
59,754
Alcanivorax borkumensis SK2
strain=SK2
null
Bacteria
Proteobacteria
Gammaproteobacteria
Oceanospirillales
Alcanivoracaceae
Alcanivorax
Alcanivorax borkumensis
true
Eubacteria
Proteobacteria
1
1
1
1
3,120,143
1
54.73
3,120,143
1
2,820
929,045
87.73194
100
0
0
352
yes
yes
yes
20
high
1,463,150
0
GGTGCCGCTAGCGATCTTGATGTAGCCGTCTTTCATTTCCAGCTGGCCGGTAAAAATATCCGTGTTGGGTTTGTGCCCGATGGCAATAAAGACCCCTTGCAGATCCAGATCTTTGCTGCCTTCGCCTTTCGTGGATCTGATGCGCATGCC
1Alcanivorax borkumensis SK2
G000009765
ASM976v2
GCF_000009765.2
PRJNA224116
SAMD00061088
null
2016/03/24
NITE
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/765/GCF_000009765.2_ASM976v2
637,000,304
RS_GCF_000009765.2
Monoisolate
Complete Genome
Full
representative genome
Minor
227,882
33,903
Streptomyces avermitilis MA-4680 = NBRC 14893
strain=MA-4680
null
Bacteria
Actinobacteria
Actinobacteria
Streptomycetales
Streptomycetaceae
Streptomyces
Streptomyces avermitilis
true
Eubacteria
Actinobacteria
1
0.999
1
1
9,119,895
2
70.7
9,025,608
1
7,915
2,675,970
86.456522
99.89
0.79
0
356
yes
yes
yes
20
high
7,278,700
0
ACGGTCGGCACCCAGGAGTACCAGCTGCGCCGCGCCCACTTCATGGACCGCTTCACCAAGGCGTACGGCGACGACGCGGCCGTAGAGGTCCGCCGGCACCTCGCCTGACCAGGCCCTGTCCGGCCGATCAGGCCGGACAGGACCTAGGAC
95Streptomyces avermitilis MA-4680 = NBRC 14893 MA-4680 ASM976v2
G000007985
ASM798v2
GCF_000007985.2
PRJNA57743
SAMN02603989
null
2012/07/31
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/985/GCF_000007985.2_ASM798v2
637,000,120
RS_GCF_000007985.2
Monoisolate
Complete Genome
Full
reference genome
Major
243,231
35,554
Geobacter sulfurreducens PCA
strain=PCA
null
Bacteria
Proteobacteria
Deltaproteobacteria
Desulfuromonadales
Geobacteraceae
Geobacter
Geobacter sulfurreducens
true
Eubacteria
Proteobacteria
1
1
1
1
3,814,128
1
60.94
3,814,128
1
3,417
1,176,369
90.878544
99.35
0
0
363
yes
yes
yes
20
high
917,930
0
GGCGCCGTCTCCCGGCGATATCCCCGTGCGGGAGCCCTCCCAGGGCGGGGGCGGTGTCCTGAGGCCGCGGACCAGGGGGGAGAATCTGCCGGAGATGGCCCAGCTCATGCCGAGCGCGGAGCGGCTGGCAAAGATCGAGGATAACTATAG
43Geobacter sulfurreducens PCA
G000010405
ASM1040v1
GCF_000010405.1
PRJNA224116
SAMD00060908
null
2007/05/08
Japan Agency for Maine-Earth Science and Technology
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/405/GCF_000010405.1_ASM1040v1
640,427,107
RS_GCF_000010405.1
Monoisolate
Complete Genome
Full
representative genome
Major
412,965
410,330
Candidatus Vesicomyosocius okutanii HA
strain=HA
null
Bacteria
Proteobacteria
Gammaproteobacteria
null
null
null
Calyptogena okutanii thioautotrophic gill symbiont
true
Eubacteria
Proteobacteria
1
1
1
1
1,022,154
1
31.59
1,022,154
1
976
297,702
85.803803
93.54
0
0
271
yes
yes
yes
20
high
751,140
0
TGAATTAGAACAGAAAATTAACATGGCTGAAAATGCTGACACAGAACAAATGACATTACTTAGGAATAAAGTCACTGAAAATGAAATCGCCCATATTGTTGCCCGTTGGACAGGTATTCCTGTGGATAAAATGATGGCAGGTGAAAAAGA
20Candidatus Vesicomyosocius okutanii HA
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
8,788,950
1
GATCGCGCCACTGCACTGCAGCCTGGGTAATGGGGAGACTCCATCTCCAATAAAATAAAACAAAATAAGATAAGATAAAATAAGATAAAATAAACTGGAGCAGCCTGGCTCCAGAGACCACACTCCAGATCACAGCTCTGTACCACCATT
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
8,435,250
1
CCTGCCCTTATGCAAATTCCCTATGGTATATAAGCCCTGGGTCTTGGGGTATAACATTGTAGGGATCCACCATGTCATCTGGAGGCTGCCTGAGACATGGTTTCTGTTCGTAAGTCCCTATTAAATGTTTCCTTCTGATCACTGTGTTTG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
5,235,000
1
AAACCAAGGCCAAGGCCATGCTGTAGATCAAGGTGATGGACCAGAAGGTGTTCAAATGGGCAAGCAGGCAGCAGCATCCCAGGCAAGTCAGGCACAAGACGGCCCCCTAGGTTCACTCTGAGTGGCGGCACTCAGCGGTGAGAACCCTCC
120homo sapiens
G000008865
ASM886v1
GCF_000008865.1
PRJNA57781
SAMN01911278
null
2004/05/11
GIRC
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/865/GCF_000008865.1_ASM886v1
637,000,108
RS_GCF_000008865.1
Monoisolate
Complete Genome
Full
reference genome
Major
386,585
562
Escherichia coli O157:H7 str. Sakai
strain=Sakai substr. RIMD 0509952
null
Bacteria
Proteobacteria
Gammaproteobacteria
Enterobacterales
Enterobacteriaceae
Escherichia
Escherichia coli
true
Eubacteria
Proteobacteria
1
0.996
0.9
1
5,594,477
3
50.48
5,498,450
1
5,399
1,663,868
87.620737
99.97
0.33
0
374
yes
yes
yes
20
high
1,062,880
0
CAAAAATGATCTCAGTTTCAAACTTGGTGGCATGTTCGTGCATGCGCTCCATTAATAACGGACCGGTCAGATCGTTTGGATCGCCAGGCCAGTTTTCCACTTCCGTGGTGGTGGTCAGTTGGCCGCCTTTTTCCATGCCGGTAATCAGCA
38Escherichia coli O157:H7 str. Sakai Sakai substr. RIMD 0509952