#genome
stringclasses
121 values
asm_name
stringclasses
120 values
assembly_accession
stringclasses
120 values
bioproject
stringclasses
45 values
biosample
stringclasses
120 values
wgs_master
float64
seq_rel_date
stringclasses
98 values
submitter
stringclasses
76 values
ftp_path
stringclasses
120 values
img_id
float64
637M
2.51B
gtdb_id
stringclasses
120 values
scope
stringclasses
3 values
assembly_level
stringclasses
1 value
genome_rep
stringclasses
1 value
refseq_category
stringclasses
3 values
release_type
stringclasses
2 values
taxid
float64
1.15k
681k
species_taxid
float64
7
911k
organism_name
stringclasses
120 values
infraspecific_name
stringclasses
112 values
isolate
stringclasses
1 value
superkingdom
stringclasses
2 values
phylum
stringclasses
18 values
class
stringclasses
30 values
order
stringclasses
56 values
family
stringclasses
75 values
genus
stringclasses
89 values
species
stringclasses
117 values
classified
bool
1 class
lv1_group
stringclasses
2 values
lv2_group
stringclasses
13 values
score_faa
float64
0.93
1
score_fna
float64
0.88
1
score_rrna
float64
0.1
1
score_trna
float64
0.6
1
total_length
float64
618k
9.12M
contigs
float64
1
22
gc
float64
22.5
72.2
n50
float64
616k
9.03M
l50
float64
1
1
proteins
float64
525
7.92k
protein_length
float64
172k
2.68M
coding_density
float64
74
96.9
completeness
float64
76.3
100
contamination
float64
0
4.4
strain_heterogeneity
float64
0
100
markers
float64
124
383
5s_rrna
stringclasses
2 values
16s_rrna
stringclasses
1 value
23s_rrna
stringclasses
1 value
trnas
float64
14
20
draft_quality
stringclasses
2 values
start_position
int64
0
10M
human_label
int64
0
1
autotrain_text
stringlengths
150
150
autotrain_label
class label
121 classes
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
6,049,650
1
AAAACATTGATGGTGATGGATTGTCTTAAAATTCTTTGCAAGGCCAGCACAGTAAAACATCATATGAATGAGCCAGATTTCAACATAAATAAGGGGCAACTAAGAAGCTAGACTCAATTGTCTCAAAGGTATCAAAACTAATCACCATAG
120homo sapiens
G000009945
ASM994v1
GCF_000009945.1
PRJNA224116
SAMD00061108
null
2006/03/09
Japanese Consortium/Yamaguchi Univ.
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/945/GCF_000009945.1_ASM994v1
637,000,067
RS_GCF_000009945.1
Monoisolate
Complete Genome
Full
representative genome
Major
264,202
83,556
Chlamydia felis Fe/C-56
strain=Fe/C-56
null
Bacteria
Chlamydiae
Chlamydiia
Chlamydiales
Chlamydiaceae
Chlamydia
Chlamydia felis
true
Eubacteria
Chlamydiae
1
0.992
1
1
1,173,791
2
39.34
1,166,239
1
994
361,027
90.6353
99.49
0
0
223
yes
yes
yes
20
high
52,520
0
ATTGTAATGATACATGCTTTCCCTGAAGACATGCTGAGCTTCTTTTTGATCTCAGGATGATTTTTTAAATAATGAATAAAGGGATCATGGGAATTTTTTGTTTTTATATTTCCATCCCTTAAGGGGATGAGACAAAGCGAAAAGTCCGTG
21Chlamydia felis Fe/C-56
G000009305
ASM930v1
GCF_000009305.1
PRJNA224116
SAMEA3138199
null
2006/06/28
Penn State Univ.
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/305/GCF_000009305.1_ASM930v1
637,000,130
RS_GCF_000009305.1
Monoisolate
Complete Genome
Full
representative genome
Major
382,638
212
Helicobacter acinonychis str. Sheeba
strain=Sheeba
null
Bacteria
Proteobacteria
Epsilonproteobacteria
Campylobacterales
Helicobacteraceae
Helicobacter
Helicobacter acinonychis
true
Eubacteria
Proteobacteria
1
0.994
0.9
1
1,557,588
2
38.17
1,553,927
1
1,547
470,618
89.011857
99.12
0.7
100
271
yes
yes
yes
20
high
762,450
0
CGTTTGGTTTTGCTATCGTTATAGTCTTGCTCTTGATTGTTATTCTTAAGAGTGAGATACCCATGCCCGAATCGCAATAACAAGCGGTGGTTTTTGGTTTCTAAAGGAAAACTCTTTTTTAAGATCTTTTGAAAGGAATTTTTCTTCTCA
46Helicobacter acinonychis str. Sheeba
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,298,250
1
GCCTAACATGGTGTGGGTCCCTGTCTCCAAAGACTATATTTCTCACGCGTGGCCCACGTGCAGCTTTAATTTCAGCAGTAGAGTGCATGAGCCAATTCAGTGAAATGTCACAGGCCAGGCAAAAAGGTTAAAGATCAGACAGACAGCTGA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
1,803,300
1
GCAAGACGACGATATGCTGTCTACAAAAAGTACACTTTAAAAACATAGGCAGGTTAAAAGTAAAAGGATGGATAGAGCTACACCATGCTAATGCTAGTCAAAAGAAATAAAAAGTGACCATATTAATATCACAGAAAGTAGATGTAAGAG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
170,700
1
TCACCTCCAGCTCTGTGGCCCTGTGGTTGGAGAACGCTGCTCAAGTGCATTTGAAAGGAACCATCCCACGCCATTCTTCAGAGTCATCTTTACTGCTGCAGTGGTCAACTTGTAGCACCCCTAAGCTCGCAGGACATATGCTTCAACTGG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
9,756,150
1
CAATTTGTTCATAAATACATTCTCATAACTTCTCAGGTTGAACTATGTAAAAAATTTTGGGATGGGTGTGGTGGCTCATGCCTTGTAATCCCAACACTTTGGGAGGCTGAGACAGGAGGATCCCTTGAGCTCAGGAGTTCGAGACCACCC
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
1,525,500
1
CCGTGAGGAGCCCGGGCCAGGCCTGTCCCCTTGGCTGGTGGAGCCGTCTCTTCTTCACCCGGGCCCTTCCTCCCCGTGCGGCCGTGTCCACGTTACCCTCTGTTATGAGAACAGCAGTTGTTTTGGATCTAAGTCTGCTGTAATGACCTC
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
5,680,200
1
CAAGGTCACACAGGCACAGAGCCCTCCATTAGGAGCACCCCAGCTGCCCCTCCCTGCCCGCGTCTGCCCCGTGGCTTCTCCTATAGGGTCTGAAAGGGACCTCTTCCCAGCGGGACTAGGTGCCCACCCAACCCCAGCCTTACCTTTGCC
120homo sapiens
G000010165
ASM1016v1
GCF_000010165.1
PRJNA224116
SAMD00060942
null
2009/04/01
National Institute of Technology and Evaluation
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/165/GCF_000010165.1_ASM1016v1
643,692,011
RS_GCF_000010165.1
Monoisolate
Complete Genome
Full
representative genome
Major
358,681
1,393
Brevibacillus brevis NBRC 100599
strain=NBRC 100599 (= 47)
null
Bacteria
Firmicutes
Bacilli
Bacillales
Paenibacillaceae
Brevibacillus
Brevibacillus brevis
true
Eubacteria
Firmicutes
1
1
1
1
6,296,436
1
47.27
6,296,436
1
5,917
1,875,522
87.757979
99.73
0.27
0
381
yes
yes
yes
20
high
3,539,510
0
ATAGCCGTGCAGATGGGCGTGGCAAAGAAACATATATATTCGATAAGGACTTTAACAAGGGGCCTTCTACTTCTAGAAAAGATTATGTTGCATCAGTAAGATTCAATCGATTGAAGTGATGGAGTATACCAAATAACACGACGAGGCACC
15Brevibacillus brevis NBRC 100599
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
8,322,300
1
GACAAGTACAGGTGGGATTACAGTGAGGCATAAGAGATGGCTCGGGGGAGTACAGGGGCCAGGCAGAGCACCCTGGGCACAGCCCTGAGGCTTTCCAAATGAAATGATCCCAAAACTCAGACCTGAAGAATAAACAGGAGCTAAGAAGCA
120homo sapiens
G000008765
ASM876v1
GCF_000008765.1
PRJNA57677
SAMN02603243
null
2002/11/22
Genome Therapeutics
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/765/GCF_000008765.1_ASM876v1
637,000,076
RS_GCF_000008765.1
Monoisolate
Complete Genome
Full
reference genome
Major
272,562
1,488
Clostridium acetobutylicum ATCC 824
strain=ATCC 824
null
Bacteria
Firmicutes
Clostridia
Clostridiales
Clostridiaceae
Clostridium
Clostridium acetobutylicum
true
Eubacteria
Firmicutes
1
0.998
0.1
0.9
4,132,880
2
30.93
3,940,880
1
3,896
1,211,240
86.343567
100
0
0
345
yes
yes
yes
19
high
91,260
0
AAGATAACAGGGAATATGAGTTCTAAACAAATGGCGTTAAATGACGTGTACTTAAATGATGCTATAATACTTACCCTTGCAAAACTATTAGAATTAACAGGTGAACGTAGTTTAGTAAAAAAGATTAAAGAATTATTCAGTATTCAAAGA
29Clostridium acetobutylicum ATCC 824
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
430,350
1
GCCGCGCTCCTCCCCCGCTCGCTGTCAGTCACGCCTCGGCTCCGGGCGCGGCCTCCGCGGGCGACAATGGCATGCGGGGCCCCCGCCCGCGCCCCCCTCCGACACCGCTGGGGACAGGGCCGGGTGATCCCGCGCTCCCCGATGCAGCCG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
7,380,750
1
CAGTTCATCAGATCTGTTGTTTCTCTTGTATGCTTGTTTTAAAATATACAAAATAATATTACTAAATTATGTCTAGTTTCTGGTCTTTTTCCACACTGCAGCAAGCTTTTCTTGAATGCAGACAGACAGGCACTCCTGTTCTTATCTCGA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
6,302,700
1
AAATACAAAAATTAGTCAGGCATGGTGGCATGCGCCTGCAGTCCCAGCTACTTGGGAGGCTGAGGCCGAAGAATCGCTTGAGCCTGGGAGGCGGAGGTTGTAGTGAGCTGAGATCGGGCCACTGCACTGCAGCCTGGGTGACAGAGCGAG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
6,414,300
1
TATTCAGTTGATTTGAGGTTTGTTTGGAAATGAGTCCCAAATTTGGGAAGCAAATGAGACAGAACCCTCCACACCCTACCACATGCTTCCAGCTCATCCCATGAAAACTCATGAGCACAGTGTGGAGTGTTTTATCTACAGCCACTCCCT
120homo sapiens
G000009305
ASM930v1
GCF_000009305.1
PRJNA224116
SAMEA3138199
null
2006/06/28
Penn State Univ.
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/305/GCF_000009305.1_ASM930v1
637,000,130
RS_GCF_000009305.1
Monoisolate
Complete Genome
Full
representative genome
Major
382,638
212
Helicobacter acinonychis str. Sheeba
strain=Sheeba
null
Bacteria
Proteobacteria
Epsilonproteobacteria
Campylobacterales
Helicobacteraceae
Helicobacter
Helicobacter acinonychis
true
Eubacteria
Proteobacteria
1
0.994
0.9
1
1,557,588
2
38.17
1,553,927
1
1,547
470,618
89.011857
99.12
0.7
100
271
yes
yes
yes
20
high
1,547,780
0
AAAGGGTGGGGTGTTTTCTTATCCGCAAAAGAAATTACGAAAGCTTTTTGAAGTTTTTCCTTTAGCCTTGATCATTGAAAAAGCTAAGGGGGAAGCGTTTTATTTTGATAAGGGGGTTAAAAAGCGTTTGTTGGATCAGGGCGTAGAAAG
46Helicobacter acinonychis str. Sheeba
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
5,439,150
1
ATTTTATCAGATGCCTGCGCTATGACAGGACCACAGAAAGAAATGAAGATAAGGAAACAGCTCAGTGGAGGACGGGGCTGTGGTCTTCATTGAGATGTCTTCCTAGGCTGAAGGGAGCAGGGGCCTCTCAACATCAGGACACATGCATGG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,176,600
1
GGAATATTTTGAAGCATTAGAAGAAGTCCTATCTGGTCAGATGCCTGGAGGTGGAGGGGAGAGGGTCAGTGGTCTCTTGAAGGACCCAAACTGTGCCTACTCCCCTGCACGTGGAAAGTGTGGGCTTCAGGGGGCTTCCAGGGAATGTAA
120homo sapiens
G000008565
ASM856v1
GCF_000008565.1
PRJNA57665
SAMN02603976
null
2000/12/11
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/565/GCF_000008565.1_ASM856v1
637,000,092
RS_GCF_000008565.1
Monoisolate
Complete Genome
Full
reference genome
Major
243,230
1,299
Deinococcus radiodurans R1
strain=R1
null
Bacteria
Deinococcus-Thermus
Deinococci
Deinococcales
Deinococcaceae
Deinococcus
Deinococcus radiodurans
true
Eubacteria
Terrabacteria
1
0.991
0.8
1
3,284,156
4
66.61
2,648,638
1
3,248
987,980
88.625967
98.72
0
0
359
yes
yes
yes
20
high
3,251,170
0
CCTACCGGCCCCACCACGCTCACCGACACCGACGCCAGCAGCACGCCCAGCCCGGTGACCAGCAGCGCGTCGCGCTCCGCGTCGGCGCCCAGGCTGCGGGCCACGTCCTCACCGAGGGCCAGCACGTTCAGCCGGGGCGTGAGCAGCAGC
35Deinococcus radiodurans R1 ASM856v1
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
3,150
1
AGAGAGGCGCGGCGCGCCGGCGCAGGCGCAGAGAGGCGCGGCGCGCCGGCGCAGGCGCAGAGAGGCGCGTCCCCTGGGGGGCGGGGGGAGGTGCGGCGCAGGCGCACAGAGGCGCGTCCCCTGGGGGGCGGGGGGAGGCGCGGCGCAGGC
120homo sapiens
G000007325
ASM732v1
GCF_000007325.1
PRJNA57885
SAMN02603417
null
2002/04/09
Integrated Genomics
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/325/GCF_000007325.1_ASM732v1
637,000,117
RS_GCF_000007325.1
Monoisolate
Complete Genome
Full
reference genome
Major
190,304
851
Fusobacterium nucleatum subsp. nucleatum ATCC 25586
strain=ATCC 25586
null
Bacteria
Fusobacteria
Fusobacteriia
Fusobacteriales
Fusobacteriaceae
Fusobacterium
Fusobacterium nucleatum
true
Eubacteria
Bacteria
1
1
1
1
2,174,500
1
27.15
2,174,500
1
2,022
670,780
90.88917
99.95
0
0
297
yes
yes
yes
20
high
86,710
0
GATATTCCACAATCAAATTTACACTTTCCTTACTAGCATTCATATAAATATTTTCTGCAAACTTGATTTTTTCATACTTTTTCAGATTTGAAGATTCCTGAACAAAATTTCTTAGACACTTATATAAATCAATTTTGACTTCTATATTTT
41Fusobacterium nucleatum subsp. nucleatum ATCC 25586
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
5,574,300
1
TGGCTATTGATCTCAGCCTGGTCGGGCCAGGCAGGGAACTTGCGTGTCTGAGGCTGGTCCTGCCTTTCAGAAAGAGCCCTGGGGCTACAGCCTGCCCAGCTGGCCTTCTTTCTAAACACAGACCTCAGGGAAGTGAGGGTTGGCCCCCAT
120homo sapiens
G000007365
ASM736v1
GCF_000007365.1
PRJNA224116
SAMN02604269
null
2002/07/02
Uppsala Univ.
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/365/GCF_000007365.1_ASM736v1
637,000,045
RS_GCF_000007365.1
Monoisolate
Complete Genome
Full
representative genome
Major
198,804
9
Buchnera aphidicola str. Sg (Schizaphis graminum)
strain=Sg
null
Bacteria
Proteobacteria
Gammaproteobacteria
Enterobacterales
Erwiniaceae
Buchnera
Buchnera aphidicola
true
Eubacteria
Proteobacteria
1
1
1
0.9
641,454
1
25.33
641,454
1
600
191,650
88.027201
98.77
0
0
206
yes
yes
yes
20
high
567,320
0
TTTTCCTTGAATTAAGTTTTCTTTTTCACTTTTTTCAAATTCAATTTTTGCTGCATTCTTCAAATTTTTTTCTAATTTTTGAAGAATTGTTGAAATTTCTTCATTTGATAATTTTAAATTACCTGAAATAGCGTCTTGTACTCCTAACAA
17Buchnera aphidicola str. Sg (Schizaphis graminum) Sg
G000007605
ASM760v1
GCF_000007605.1
PRJNA224116
SAMN02603993
null
2003/04/14
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/605/GCF_000007605.1_ASM760v1
637,000,066
RS_GCF_000007605.1
Monoisolate
Complete Genome
Full
representative genome
Major
227,941
83,557
Chlamydophila caviae GPIC
null
GPIC
Bacteria
Chlamydiae
Chlamydiia
Chlamydiales
Chlamydiaceae
Chlamydia
Chlamydia caviae
true
Eubacteria
Chlamydiae
1
0.992
1
1
1,181,356
2
39.19
1,173,390
1
1,003
363,158
90.588188
99.49
0
0
220
yes
yes
yes
20
high
740,480
0
AAGGAACTTCCCATCTACCCGGCAAATTTCTAGGTTTTCCTCAGAAGGAAGACTACTTCTTAACCAGCGCATCAGATGGCGTAAATAATAGGGGGAGACACCCGCGTCAGAATAAATGAGTATTTTTGTTCTCATAGTAAATAAACCGGA
23Chlamydophila caviae GPIC
G000010825
ASM1082v1
GCF_000010825.1
PRJNA224116
SAMD00060943
null
2009/08/26
Acetobacter pasteurianus genome sequencing consortium
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/825/GCF_000010825.1_ASM1082v1
644,736,321
RS_GCF_000010825.1
Monoisolate
Complete Genome
Full
representative genome
Major
634,452
438
Acetobacter pasteurianus IFO 3283-01
strain=IFO 3283 substr. IFO 3283-01
null
Bacteria
Proteobacteria
Alphaproteobacteria
Rhodospirillales
Acetobacteraceae
Acetobacter
Acetobacter pasteurianus
true
Eubacteria
Proteobacteria
1
0.982
0.9
1
3,340,249
7
53.1
2,907,495
1
3,156
1,006,859
88.810714
100
0
0
352
yes
yes
yes
20
high
2,675,660
0
GCATGGGCACTGTACTGGCCTCTGGCGGAATGGCCATGAACTACGCCTATGCGGCAGCGGATGATGCGGCCTCGCTTGATGCGTTGGAACAGCAGATTGCGCGCATTCAAACCGAACAGCGCGAATTGCAAAAAGCACTTGTAAGCGTGC
0Acetobacter pasteurianus IFO 3283-01 IFO 3283 substr. IFO 3283-01
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,627,200
1
TGGCTTATGGTCTAGCACCCATGTTCAGACATTAGCCAAATAACCAGACAAATCACTGTTTACTTTTAAACTGAAACAATCCTCTGAAAGAAAGGGTCACACTTCCATAAGGGCTTCAAGAGGTATTTTAGCAGTCATCTCCACTACATG
120homo sapiens
G000006725
ASM672v1
GCF_000006725.1
PRJNA224116
SAMN02603773
null
2004/06/04
Sao Paulo state (Brazil) Consortium
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/725/GCF_000006725.1_ASM672v1
637,000,348
RS_GCF_000006725.1
Monoisolate
Complete Genome
Full
representative genome
Major
160,492
2,371
Xylella fastidiosa 9a5c
null
null
Bacteria
Proteobacteria
Gammaproteobacteria
Xanthomonadales
Xanthomonadaceae
Xylella
Xylella fastidiosa
true
Eubacteria
Proteobacteria
0.98
0.993
0.9
1
2,731,750
3
52.62
2,679,306
1
2,664
765,931
82.59299
99.59
0.18
0
325
yes
yes
yes
20
high
726,960
0
GTTGGGGGCGCCGGATGTGCGCTATGTGCTGGCACTGCCTGCGGTTTCGGCCGAGCAGGCGTTGCAAGCTGGTGAGGCGTTGCGCCCACGTCTGGAGGGTGCGGTTGCCCAGGGTATTGTTGCTGGTTACGACATGGCGGCGCGTTATTT
114Xylella fastidiosa 9a5c
G000007345
ASM734v1
GCF_000007345.1
PRJNA224116
SAMN03081414
null
2002/04/03
Broad Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/345/GCF_000007345.1_ASM734v1
638,154,508
RS_GCF_000007345.1
Monoisolate
Complete Genome
Full
representative genome
Major
188,937
2,214
Methanosarcina acetivorans C2A
strain=C2A
null
Archaea
Euryarchaeota
Methanomicrobia
Methanosarcinales
Methanosarcinaceae
Methanosarcina
Methanosarcina acetivorans
true
Archaea
Euryarchaeota
0.98
1
0.8
0.9
5,751,492
1
42.68
5,751,492
1
4,884
1,470,904
75.340086
99.84
0.03
0
229
no
yes
yes
18
medium
3,646,760
0
CCCTATACCGGGTATTTTTTATATTTATGGTTGAAATCAGTATCTAAGGAAAAATAAGAAAAAACGGGACAAAAAAACTGCAAAACAAGAAAAAAGATAAAGAAGGAAAGTCTGACTCTTTTCGAGGTGTATATTTTGAACGGTATGGGT
61Methanosarcina acetivorans C2A
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
5,567,400
1
TGGTGGTTCTTTCTGACCTGCACCTGCTGGGGTTGATGCCAACTGTGGACTCTCTCTCTTCTCTCCCTTTCTCCTTTTTCTCTTTTCTCCATTGCTGTCCGAAGTACTCGGTATGGGAGTCCCAAAAGACAGCTCCAGTTTTACAGGTAA
120homo sapiens
G000006965
ASM696v1
GCF_000006965.1
PRJNA57603
SAMEA3283068
null
2003/05/06
MELILO
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/965/GCF_000006965.1_ASM696v1
637,000,269
RS_GCF_000006965.1
Monoisolate
Complete Genome
Full
reference genome
Major
266,834
382
Sinorhizobium meliloti 1021
strain=1021
null
Bacteria
Proteobacteria
Alphaproteobacteria
Rhizobiales
Rhizobiaceae
Sinorhizobium
Sinorhizobium meliloti
true
Eubacteria
Proteobacteria
1
0.997
0.1
1
6,691,694
3
62.17
3,654,135
1
6,303
1,956,944
86.157242
99.28
0.31
0
373
yes
yes
yes
20
high
1,274,130
0
ACGCCGGGCCCGTTCGGCAGGCGCTTGACGAAGGCCTGGATGAGTTCGGCTCCCTTGAGGCCCGCCGCTTCCGGCAGGCTCTCCGCCCATCCTATTGCCGGCGCCGGCCGTTCGGCCTCGGTCACTTCGACCAGATCGTCTTCGTCGTCG
86Sinorhizobium meliloti 1021
G000007745
ASM774v1
GCF_000007745.1
PRJNA224116
SAMN02603473
null
2004/09/17
Korea Advanced Institute of Science and Technology, Republic of Korea, Yuseong-gu
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/745/GCF_000007745.1_ASM774v1
637,000,156
RS_GCF_000007745.1
Monoisolate
Complete Genome
Full
representative genome
Major
221,988
157,673
Mannheimia succiniciproducens MBEL55E
strain=MBEL55E
null
Bacteria
Proteobacteria
Gammaproteobacteria
Pasteurellales
Pasteurellaceae
Basfia
[Mannheimia] succiniciproducens
true
Eubacteria
Proteobacteria
1
1
1
1
2,314,078
1
42.54
2,314,078
1
2,120
690,147
87.871627
100
0
0
329
yes
yes
yes
20
high
422,110
0
CACCGAGTTCTTCTACCATTACGGTTAAAATGAAACTGAATACGGATCCGGCTTCAGCTTTGGCGGACGTATTATCCAAAGTTCAATCCGTACGTTCGGAATTACCGAGCGGTATCGAAGACCCGACCTTAACTTCTTCAACCGGTGGTT
57Mannheimia succiniciproducens MBEL55E
G000009765
ASM976v2
GCF_000009765.2
PRJNA224116
SAMD00061088
null
2016/03/24
NITE
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/765/GCF_000009765.2_ASM976v2
637,000,304
RS_GCF_000009765.2
Monoisolate
Complete Genome
Full
representative genome
Minor
227,882
33,903
Streptomyces avermitilis MA-4680 = NBRC 14893
strain=MA-4680
null
Bacteria
Actinobacteria
Actinobacteria
Streptomycetales
Streptomycetaceae
Streptomyces
Streptomyces avermitilis
true
Eubacteria
Actinobacteria
1
0.999
1
1
9,119,895
2
70.7
9,025,608
1
7,915
2,675,970
86.456522
99.89
0.79
0
356
yes
yes
yes
20
high
6,146,270
0
CAAGATCCTGCGCAAGCTGCACCGCATCGCGGACCAGGTCAACTCCATCGAAGAGGACTTCGTCGACCTCTCCGACGCCGAGCTGCGGGCCCTCACCGATGAGTACAAGCAGCGGTACGCCGACGGCGAGAGCCTCGACGACCTGCTGCC
95Streptomyces avermitilis MA-4680 = NBRC 14893 MA-4680 ASM976v2
G000007985
ASM798v2
GCF_000007985.2
PRJNA57743
SAMN02603989
null
2012/07/31
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/985/GCF_000007985.2_ASM798v2
637,000,120
RS_GCF_000007985.2
Monoisolate
Complete Genome
Full
reference genome
Major
243,231
35,554
Geobacter sulfurreducens PCA
strain=PCA
null
Bacteria
Proteobacteria
Deltaproteobacteria
Desulfuromonadales
Geobacteraceae
Geobacter
Geobacter sulfurreducens
true
Eubacteria
Proteobacteria
1
1
1
1
3,814,128
1
60.94
3,814,128
1
3,417
1,176,369
90.878544
99.35
0
0
363
yes
yes
yes
20
high
66,950
0
GTTGAAGCAACTGCCCTTGCGTGAAGACCGGCGTCGCGATGCGAGCCCTGCGGCACTAAGCGAAATACCCCTTGCCGACCGGCAAGCTGCTTTCACGCCACCTCCCGTCATTCTTCCGATAAGTGACATTCTTTTCGATGTCTGGGCGCT
43Geobacter sulfurreducens PCA
G000007845
ASM784v1
GCF_000007845.1
PRJNA57909
SAMN02603432
null
2003/04/30
J. Craig Venter Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/845/GCF_000007845.1_ASM784v1
637,000,014
RS_GCF_000007845.1
Monoisolate
Complete Genome
Full
reference genome
Major
198,094
1,392
Bacillus anthracis str. Ames
strain=Ames
null
Bacteria
Firmicutes
Bacilli
Bacillales
Bacillaceae
Bacillus
Bacillus anthracis
true
Eubacteria
Firmicutes
1
1
1
1
5,227,293
1
35.38
5,227,293
1
5,474
1,495,110
84.244541
99.23
0.15
0
381
yes
yes
yes
20
high
2,669,420
0
TTCACAAATGAAATTCCGCTTTTTACATCCCCTTTTTTCGTTAGTTCTTTTCCTCTGTCTAAAATTAATGTCATTGGTTGCTTTTTAAATATTAATTTAGAACGATTCCCTCTTCCGCGCCCTGGAAACCAAGCAATCCAATTTAATTCA
5Bacillus anthracis str. Ames
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,683,450
1
GAAGAGACCCCATGACTGAATAGGAACCACACACATAATCCACACTGGGGTAAGTGCTAGTTCAAAAAGAACACAGTGCTTGTGATCATGAGAGGCAGGGACCTCACCTGTTCAGAATGTGAACCCTGAAAATTTGAGACAGGTCTTGGT
120homo sapiens
G000010085
ASM1008v1
GCF_000010085.1
PRJNA224116
SAMD00061079
null
2006/01/10
Kitasato Institute for Life Sciences, Japan
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/085/GCF_000010085.1_ASM1008v1
637,000,270
RS_GCF_000010085.1
Monoisolate
Complete Genome
Full
representative genome
Major
343,509
63,612
Sodalis glossinidius str. 'morsitans'
strain=morsitans
null
Bacteria
Proteobacteria
Gammaproteobacteria
Enterobacterales
Pectobacteriaceae
Sodalis
Sodalis glossinidius
true
Eubacteria
Proteobacteria
1
0.993
1
1
4,292,502
4
54.5
4,171,146
1
5,742
1,142,020
78.310831
100
0
0
357
yes
yes
yes
20
high
1,694,550
0
GATGACGCCACGTTTTGATCTTCCGCGCTTTTCTCGTTAAAGATTAAGGGTAACCTCGGCGTTCGGGGTTACCGTTTTCTTTCAACCAGCCAAGATGATGAGGGATAAACTTATGAAAAGACAAAAACGAGATCGCCTTGAACGTGCTCA
87Sodalis glossinidius str. 'morsitans' morsitans
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,275,150
1
ATTTTGCCAAGAAGATGGCCCTGAGAAGGAAAGGTGGATTGATGCCTTGGTTTAGGCTTGCAGCTGGGTGGCATGGGGTCTTTCTAGCAAAGACTTGTCCCCTGGGCTCTCTCTGAGTCCCGTCTGTAACACTCTGTGTTCTCTAGTTCA
120homo sapiens
G000006785
ASM678v2
GCF_000006785.2
PRJNA57845
SAMN02604089
null
2014/04/01
Univ. Oklahoma
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/785/GCF_000006785.2_ASM678v2
637,000,291
RS_GCF_000006785.2
Monoisolate
Complete Genome
Full
reference genome
Major
160,490
1,314
Streptococcus pyogenes M1 GAS
strain=SF370
null
Bacteria
Firmicutes
Bacilli
Lactobacillales
Streptococcaceae
Streptococcus
Streptococcus pyogenes
true
Eubacteria
Firmicutes
1
1
0.6
1
1,852,433
1
38.51
1,852,433
1
1,776
539,188
85.75128
100
0
0
277
yes
yes
yes
20
high
894,530
0
AAATCCTCAACGCTTCAGGACTGCCGAATGAGGTGCTAAAGGACCATCGTTATCCTGGTTCTGCGTTGGAAGAAGAGAATATGTTGAGTGCTCAGGATGTTGCCATTGTGACGATGCATTTACTGGAAGATTTTCCTGAGATTTTAGAGA
93Streptococcus pyogenes M1 GAS SF370
G000010505
ASM1050v1
GCF_000010505.1
PRJNA224116
SAMD00060922
null
2008/05/20
Kitasato University
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/505/GCF_000010505.1_ASM1050v1
642,555,148
RS_GCF_000010505.1
Monoisolate
Complete Genome
Full
representative genome
Major
431,947
837
Porphyromonas gingivalis ATCC 33277
strain=ATCC 33277
null
Bacteria
Bacteroidetes
Bacteroidia
Bacteroidales
Porphyromonadaceae
Porphyromonas
Porphyromonas gingivalis
true
Eubacteria
Bacteroidetes
1
1
0.9
1
2,354,886
1
48.36
2,354,886
1
1,981
685,765
85.805173
99.92
0
0
278
yes
yes
yes
20
high
1,162,200
0
GGATATTTCCCCTGTGGTATAGTCGGATTCGGGATGCAACTTGCTCGTTATGTAATGATCCCGAATGGAAGTACGAGGCGTGGCGTACAGATAGACATCGCGATGCAATCCGCTCATATGGAACATATCCTGTCCCTCCAAATAAGAAGC
75Porphyromonas gingivalis ATCC 33277
G000007005
ASM700v1
GCF_000007005.1
PRJNA224116
SAMN02603227
null
2002/11/25
European/Canadian Consortium
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/005/GCF_000007005.1_ASM700v1
638,154,518
RS_GCF_000007005.1
Monoisolate
Complete Genome
Full
representative genome
Major
273,057
2,287
Sulfolobus solfataricus P2
strain=P2
null
Archaea
Crenarchaeota
Thermoprotei
Sulfolobales
Sulfolobaceae
Sulfolobus
Sulfolobus solfataricus
true
Archaea
Crenarchaeota
0.96
1
1
0.9
2,992,245
1
35.79
2,992,245
1
3,281
874,971
86.125133
100
0
0
196
no
yes
yes
14
medium
832,780
0
ATTGATGAAAGGCAAAATTTTAATTGATATGAGCACTATAAGTCCGACATTAAGTATTAGCTTAGCCAAGAGGATAGAAAGCAATGGCGGTACAATGTTTGATGCTCCTGTAATAGGAACTTCAGTATTTGTTGAGCAAAAGAAATTGGT
97Sulfolobus solfataricus P2
G000007825
ASM782v1
GCF_000007825.1
PRJNA57975
SAMN02603340
null
2004/07/06
INRA
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/825/GCF_000007825.1_ASM782v1
637,000,017
RS_GCF_000007825.1
Monoisolate
Complete Genome
Full
reference genome
Major
226,900
1,396
Bacillus cereus ATCC 14579
strain=ATCC 14579
null
Bacteria
Firmicutes
Bacilli
Bacillales
Bacillaceae
Bacillus
Bacillus cereus
true
Eubacteria
Firmicutes
1
0.998
1
1
5,427,083
2
35.29
5,411,809
1
5,541
1,546,426
83.933929
98.18
0.58
18.18
383
yes
yes
yes
20
high
1,355,900
0
TTAGAACAGGGAGAACAATAGACCAATAAGTGCTACTCGGAATAAAATTGCGATAAGTGCAGCAATTCCACCGACAACTGCAGCGATACCGCCAGTTACAGTAGCTCCGCGATTATAAGCGTAAATACCGAGTAAAACAGAAACAAGACC
7Bacillus cereus ATCC 14579
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
8,097,450
1
TTCATGCATTTCCACAACATGGTGATAATAAGGTTAAGAGTTGTCTGAACATTAGAGGTTTACTGTATAATTCAGAAATGTATACATAAAACTTTTAATTGGTAGTCAGACACTAATTAAGCATACAGAGGGGGGAACACCGTCTCCCAG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
753,600
1
TCTCCTACCCCAAGCCACGCCAGGCTCACAGAGGCCCTCTGGCACCTGTGGGAAGGGAGGGCCGCCCCTCTTCATGCCCAGGGACCTAAGGCCACAGAGGCACTTGTGGCACACGGCCCCGAGGCGTGGGGCCCGGGCTGGTTTTCTGAA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
7,011,450
1
TATAGGTTCATTTTTTCTGTTCTAGAACTTCGTAGAACTGGAATCCTGCAGTATATGCACTCAGGTATATACTTGGCTTCTTTCACTCCACATCGTATTTTGCCATTCATCATGTTGCTACTGCCTACTGTGTTATTTATGCCTTGTCTA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,598,400
1
GGTTTTTGTCCCCAGCTGCTGAGACATGCTGTGTAGGCCCTTGGCATTTCCCTTCTGATAAGGATGTGTCTATTTACCTGGGGCCTTGGCCACTGCGCAGCTTAGCAATGTGCTTTGTGATGAGGGCTTTGGGGCATGCAGTATATACTC
120homo sapiens
G000010085
ASM1008v1
GCF_000010085.1
PRJNA224116
SAMD00061079
null
2006/01/10
Kitasato Institute for Life Sciences, Japan
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/085/GCF_000010085.1_ASM1008v1
637,000,270
RS_GCF_000010085.1
Monoisolate
Complete Genome
Full
representative genome
Major
343,509
63,612
Sodalis glossinidius str. 'morsitans'
strain=morsitans
null
Bacteria
Proteobacteria
Gammaproteobacteria
Enterobacterales
Pectobacteriaceae
Sodalis
Sodalis glossinidius
true
Eubacteria
Proteobacteria
1
0.993
1
1
4,292,502
4
54.5
4,171,146
1
5,742
1,142,020
78.310831
100
0
0
357
yes
yes
yes
20
high
4,260,100
0
CGCAGATACAGCGGCGCGGAACGGTGTTGTTTGGTGAGGAAGACAGACCGCTCAGGTCAACCGCCGTCAGCCCTGTTTGTCGTGTGATGCCCAAACCGGATAGAAATGCGTCTTTCGTGGCGGCTTACTTCTTGCAGCGATATGAGGAAA
87Sodalis glossinidius str. 'morsitans' morsitans
G000009705
ASM970v1
GCF_000009705.1
PRJNA224116
SAMD00061094
null
2004/05/11
Kazusa
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/705/GCF_000009705.1_ASM970v1
637,000,199
RS_GCF_000009705.1
Monoisolate
Complete Genome
Full
representative genome
Major
103,690
103,690
Nostoc sp. PCC 7120
null
null
Bacteria
Cyanobacteria
null
Nostocales
Nostocaceae
Nostoc
Nostoc sp. PCC 7120
true
Eubacteria
Cyanobacteria
1
0.992
0.9
1
7,211,789
7
41.27
6,413,771
1
6,159
2,024,679
82.716938
99.19
0
0
360
yes
yes
yes
20
high
5,268,770
0
AGTTCTCCCCGACGAAAATGCCACTGGAAATGCCACTCAAAATCACCAGCACTCACTTCACCTTCTAGGAAGCCGTGTTGCCAGGATTGGCGAATGATTTTGACATGGGCAGTAGTTTCTGGCAAAGGTTTAGCACTCACAATGCTTGGT
70Nostoc sp. PCC 7120 ASM970v1
G000007525
ASM752v1
GCF_000007525.1
PRJNA57939
SAMN02603675
null
2005/01/21
Nestle Research Center, Switzerland
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/525/GCF_000007525.1_ASM752v1
637,000,031
RS_GCF_000007525.1
Monoisolate
Complete Genome
Full
reference genome
Major
206,672
216,816
Bifidobacterium longum NCC2705
strain=NCC2705
null
Bacteria
Actinobacteria
Actinobacteria
Bifidobacteriales
Bifidobacteriaceae
Bifidobacterium
Bifidobacterium longum
true
Eubacteria
Actinobacteria
1
0.996
0.9
1
2,260,266
2
60.13
2,256,640
1
1,833
667,063
86.967994
100
0
0
289
yes
yes
yes
20
high
1,131,650
0
TTGCTTCGTGCCATAGGTATTCATATGCCTTCAATTCAAACGGATAATATGTTCTATTAATTGTAGTGAGGGAGAGAAGAAATCCAAGAAAAACTCGGGACGACAACTGACCATCTGCACAAGGCATGACCTATTGCAGTTCAAGACCCG
13Bifidobacterium longum NCC2705
G000010125
ASM1012v1
GCF_000010125.1
PRJNA224116
SAMD00061076
null
2005/08/12
Kitasato Institute for Life Sciences, Japan
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/125/GCF_000010125.1_ASM1012v1
637,000,284
RS_GCF_000010125.1
Monoisolate
Complete Genome
Full
representative genome
Major
342,451
29,385
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
strain=ATCC 15305
null
Bacteria
Firmicutes
Bacilli
Bacillales
Staphylococcaceae
Staphylococcus
Staphylococcus saprophyticus
true
Eubacteria
Firmicutes
1
0.992
1
1
2,577,899
3
33.19
2,516,575
1
2,502
730,892
83.519176
99.44
0
0
348
yes
yes
yes
20
high
140,660
0
TTATTTTCAATATTATTAACACATAAATATGATCAAAACATTGAAACATCTTTAAATGTGATTAAAAATCCATTTGCATAAAATGAAATCTATTTTCATTTATGGATATTCAATAGTGATAAAAAATGAAAATAGCAATCAATTTCGCCC
90Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 ASM1012v1
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,207,500
1
TTCTTGCTGTGTAATCCCGTGGTGGAAGCAGGAGGGCAAGAGAGCACATGGAGGGGAGGAAGGGGCCAAACGCGTCCTTTTATCAGGAACCCACTTGGGGGAGATAATGGCATTCAGCCATTCAAGGGGGCAGAGCCTTCAGGGCCCCCT
120homo sapiens
G000009765
ASM976v2
GCF_000009765.2
PRJNA224116
SAMD00061088
null
2016/03/24
NITE
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/765/GCF_000009765.2_ASM976v2
637,000,304
RS_GCF_000009765.2
Monoisolate
Complete Genome
Full
representative genome
Minor
227,882
33,903
Streptomyces avermitilis MA-4680 = NBRC 14893
strain=MA-4680
null
Bacteria
Actinobacteria
Actinobacteria
Streptomycetales
Streptomycetaceae
Streptomyces
Streptomyces avermitilis
true
Eubacteria
Actinobacteria
1
0.999
1
1
9,119,895
2
70.7
9,025,608
1
7,915
2,675,970
86.456522
99.89
0.79
0
356
yes
yes
yes
20
high
6,120,270
0
CCTCGACGAGGTCATCGACAAGGCCGACATCTTCGTCACCACGACGGGCAACAAGGACATCATCATGGCCTCGGACATGGCCAAGATGAAGCACCAGGCGATCGTGGGCAACATCGGCCACTTCGACAACGAGATCGACATGGCCGGCCT
95Streptomyces avermitilis MA-4680 = NBRC 14893 MA-4680 ASM976v2
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
3,780,450
1
AGAAAGCCTGTACCAACCCATGGAACCCACTTTGCTCACTAGGCTGGGACCCCAGGGGACCCAGCAGGAGCAACAGGGCAGCGGTAGCCCGTGACTTTGATGTTTGCCTGTCTTCACTCGCTGTCTTTGTTCTTAATGGAAGCTGCTTCT
120homo sapiens
G000007825
ASM782v1
GCF_000007825.1
PRJNA57975
SAMN02603340
null
2004/07/06
INRA
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/825/GCF_000007825.1_ASM782v1
637,000,017
RS_GCF_000007825.1
Monoisolate
Complete Genome
Full
reference genome
Major
226,900
1,396
Bacillus cereus ATCC 14579
strain=ATCC 14579
null
Bacteria
Firmicutes
Bacilli
Bacillales
Bacillaceae
Bacillus
Bacillus cereus
true
Eubacteria
Firmicutes
1
0.998
1
1
5,427,083
2
35.29
5,411,809
1
5,541
1,546,426
83.933929
98.18
0.58
18.18
383
yes
yes
yes
20
high
1,664,520
0
ATGGAGCGGCCTATGCATCTGTTATATCTACAGTTATTACGTTTATTGTCATGCTTGTGTATTTAAAGAAGAAAAATCACCCATTACAACTAGATGGAACGGTTAGAAAATACCTTCGAATGGATGGGGAGTTATTAAAGCTATTACTAA
7Bacillus cereus ATCC 14579
G000007205
ASM720v1
GCF_000007205.1
PRJNA224116
SAMN02602979
null
2003/07/25
ALTANA Pharma
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/205/GCF_000007205.1_ASM720v1
637,000,071
RS_GCF_000007205.1
Monoisolate
Complete Genome
Full
na
Major
182,082
83,558
Chlamydophila pneumoniae TW-183
strain=TW-183
null
Bacteria
Chlamydiae
Chlamydiia
Chlamydiales
Chlamydiaceae
Chlamydia
Chlamydia pneumoniae
true
Eubacteria
Chlamydiae
1
1
1
1
1,225,935
1
40.58
1,225,935
1
1,055
372,698
89.583869
99.49
0
0
219
yes
yes
yes
20
high
246,480
0
TCGTTCCAGGAGTGAAAACCCTCTTTCCACAAACCTACCACCTTCCCTATCTAAAGTTTGTCCAAGGAGAAAATGTCGTTCACACTCCTCTAAAAGTAGGCGTAATGTTCTCAGGAGGACCTGCTCCAGGAGGACATAATGTCATCCAAG
25Chlamydophila pneumoniae TW-183
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
5,558,700
1
TTGGGAACACCTAATAGAGGATCAGGCGATATTGAACTAAGTATCTTAGGTACAATGCTGGTGCTGTGGTTAAGACAAAATTCTCAGATGAGTGCTGAGGTATTGAGGGGTGGAGCTCAGGGGATTGCTACGCACTTTCAAACAGTTCAG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
6,349,950
1
AAAAAGCAGATTTTAATTTAAAAACAGATTTTTATGCAGTATAGCCATGTAAAGTTCTTTTCCAGTGTAAAATCAAAGTTTCTCTGTATCCCACTTCACCTGTAGAAACACTGAAATTTAAAAATATGAGTTTTAACATTTTGCCTATTT
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
1,422,300
1
GGCCAGGGGTCTCTCTAACACCTTCAAGCCACACAAGCAGGGTCTTGTCGTCCATTTTTGGAAAACTGCCCAGGGGCAGCTGTGTGGCCCCCACCCGAAGGTGACATGCTCCCCAGGGCCGAGGACGGTGCAGGAGCGGGAGGGAACCTG
120homo sapiens
G000007785
ASM778v1
GCF_000007785.1
PRJNA57669
SAMN02603978
null
2003/03/28
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/785/GCF_000007785.1_ASM778v1
637,000,101
RS_GCF_000007785.1
Monoisolate
Complete Genome
Full
reference genome
Major
226,185
1,351
Enterococcus faecalis V583
strain=V583
null
Bacteria
Firmicutes
Bacilli
Lactobacillales
Enterococcaceae
Enterococcus
Enterococcus faecalis
true
Eubacteria
Firmicutes
0.99
0.991
1
1
3,359,974
4
37.38
3,218,031
1
3,271
1,000,353
87.714339
99.53
0.31
0
309
yes
yes
yes
20
high
2,141,620
0
ACTAAAAGCTCTTGACTTACTTGCCTGATCCTTTGTAACAACAAACAAACTCCAACCACTAAAGTTATAATATTGATATTGACCATTTAAACTACTTGTCATAGGAATATCTGCCAACGTATAACTCCCTGTCGCACTTTTATCCCCTTG
37Enterococcus faecalis V583 ASM778v1
G000007325
ASM732v1
GCF_000007325.1
PRJNA57885
SAMN02603417
null
2002/04/09
Integrated Genomics
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/325/GCF_000007325.1_ASM732v1
637,000,117
RS_GCF_000007325.1
Monoisolate
Complete Genome
Full
reference genome
Major
190,304
851
Fusobacterium nucleatum subsp. nucleatum ATCC 25586
strain=ATCC 25586
null
Bacteria
Fusobacteria
Fusobacteriia
Fusobacteriales
Fusobacteriaceae
Fusobacterium
Fusobacterium nucleatum
true
Eubacteria
Bacteria
1
1
1
1
2,174,500
1
27.15
2,174,500
1
2,022
670,780
90.88917
99.95
0
0
297
yes
yes
yes
20
high
1,780,220
0
TGAAATTAGGAATAAAGTTAAAAATAAAGAAGACATTTCAGGACTTGTAAATAAAAAAGTTAAAAAATTAATTGAAAAAGAATATATAGATTAAAAATGAGAGTCATTGTAAAATTTTGCAATAACTCTCATTATATTTTATAAATTTGT
41Fusobacterium nucleatum subsp. nucleatum ATCC 25586
G000007265
ASM726v1
GCF_000007265.1
PRJNA57943
SAMN02604013
null
2002/08/28
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/265/GCF_000007265.1_ASM726v1
637,000,285
RS_GCF_000007265.1
Monoisolate
Complete Genome
Full
reference genome
Major
208,435
1,311
Streptococcus agalactiae 2603V/R
strain=2603V/R
null
Bacteria
Firmicutes
Bacilli
Lactobacillales
Streptococcaceae
Streptococcus
Streptococcus agalactiae
true
Eubacteria
Firmicutes
1
1
1
1
2,160,267
1
35.65
2,160,267
1
2,106
643,747
87.791509
100
0.18
0
298
yes
yes
yes
20
high
924,950
0
AATGTATCTATAATTTTTTCAAATTGTTTTCGTTTAATCTGAATACGATTGCCATTCATAATCAGCCAATTTGCATTTTTATTTTCCTCTGCCAAGCGTCGTAGCTTGTTTTCGCCAATACGAAAATATTTTGACGCTTCTTCAATGGTT
91Streptococcus agalactiae 2603V/R
G000007985
ASM798v2
GCF_000007985.2
PRJNA57743
SAMN02603989
null
2012/07/31
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/985/GCF_000007985.2_ASM798v2
637,000,120
RS_GCF_000007985.2
Monoisolate
Complete Genome
Full
reference genome
Major
243,231
35,554
Geobacter sulfurreducens PCA
strain=PCA
null
Bacteria
Proteobacteria
Deltaproteobacteria
Desulfuromonadales
Geobacteraceae
Geobacter
Geobacter sulfurreducens
true
Eubacteria
Proteobacteria
1
1
1
1
3,814,128
1
60.94
3,814,128
1
3,417
1,176,369
90.878544
99.35
0
0
363
yes
yes
yes
20
high
1,838,070
0
CAAAAACCCCGCTCCAGCGGCGTCTCGCCGATTTCGGCAAGCGCCTTGCGCTGGCGGTGCTCGCCATTTGCGCGGTGGTATTCACACTGGGGCTGCTGCGGGGAGAGCCTCTCCTCCTCATGCTGCTAACCTCCATATCCCTGGCAGTTG
43Geobacter sulfurreducens PCA
G000009705
ASM970v1
GCF_000009705.1
PRJNA224116
SAMD00061094
null
2004/05/11
Kazusa
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/705/GCF_000009705.1_ASM970v1
637,000,199
RS_GCF_000009705.1
Monoisolate
Complete Genome
Full
representative genome
Major
103,690
103,690
Nostoc sp. PCC 7120
null
null
Bacteria
Cyanobacteria
null
Nostocales
Nostocaceae
Nostoc
Nostoc sp. PCC 7120
true
Eubacteria
Cyanobacteria
1
0.992
0.9
1
7,211,789
7
41.27
6,413,771
1
6,159
2,024,679
82.716938
99.19
0
0
360
yes
yes
yes
20
high
4,268,290
0
TTGGCTGTAGGTTTACCCCAAGTAATATCGTTACCTTTTTGACCCAATACGGCGTAGATATCATACTTGGCACGATCAAATTGTTCTGCCCAAATACGATAGGCTTCGACTTTTTGATATTCCTTTGACCCTTGCCAAGCTAACCAGAAA
70Nostoc sp. PCC 7120 ASM970v1
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
9,274,050
1
CGGTGTCCTGATCCCGCATGGTCCGCCGATGTGCGGCCCGGATCCGAAATACCCCCAGGATAATCATGAACACCAGGAAGCTGACGCACACCACGATCACAACTGTCGCAGTGCTGGGGACGACTGTGGGAGAATGAGGGGGCGGGATGC
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,919,150
1
TCCGTCTAGGGGTGCAGGTGGGCTGGGCTCCCGACATCCCCAAGGCCCACAGAGGAGTCTGGTGAGCGTTGGGGCAGCCACGGCGAGGTCCACACCATGGCCTTGTGACTGGCCAGGTATATGGTCAGGCGGGGTGGGCGGCTCTGTGGA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,903,800
1
AGGGTTTATAAAATGCTCCCCAAGGAACACAAACTGAGGTGGTAGGAGGGGACAGGTGGTGGGGGTTCTGACTCAAGTGCCATAATAAGCTCTCCAAGGTTGAGTAGATTTTCTTGAATGAATGCTTCTTCATTTGCTGTGTGCCCTTAG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
237,000
1
ATCAGCATCAGGGGTTCATGCTAACACAGAGAAAATGCGTATGACTGCAGGAGTCCATGCTTGGTTTAAATAGCCCTGCTGTTGACTCAGATATGTACAGGTAGGCAGGAACCACACACTGTACACATATACCACATGCCACCACACACC
120homo sapiens
G000008185
ASM818v1
GCF_000008185.1
PRJNA57583
SAMN02603967
null
2004/02/03
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/185/GCF_000008185.1_ASM818v1
637,000,327
RS_GCF_000008185.1
Monoisolate
Complete Genome
Full
reference genome
Major
243,275
158
Treponema denticola ATCC 35405
strain=ATCC 35405
null
Bacteria
Spirochaetes
Spirochaetia
Spirochaetales
Spirochaetaceae
Treponema
Treponema denticola
true
Eubacteria
Spirochaetes
1
1
1
1
2,843,201
1
37.87
2,843,201
1
2,578
885,778
91.799314
100
0
0
281
yes
yes
yes
20
high
2,488,590
0
TTGCTAACAAAATCTTGTTTACGGAGGAATATGATAAAAATGAGTAAAAAGATAAAAGCTATAGGATTCTTTGTAACAGCTATTTTAGTATTTGCTTTTGCTTGCGAACCGGAGATGCTTTACGGGACTGCAAAGGTAGCTGGCTCGACC
104Treponema denticola ATCC 35405
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
3,080,100
1
TGCTGGGTCCTCCTGGGTGTGCTAGGTCCTCCTGGGTGTGCTGGGTCCTCCTGGGTGTCCTGGGTCCTGCCAGGTGTGCTGGGTCCCCGTGGGTGTGCTGAGTCCTTTCCAGGTGTGCTGGGTCCTCCTGGGTGTGCTAGGTCCTCCTGG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
167,250
1
TCATAACAAACTTGAGAGGCTGAGGTGAGACAATCGATTTAGCCCAGGAGTTTGAGATCAGCCTGGACGACGTAACTAAATCTCATCTCTACAAGGAAGAGGTGGGAGGATCACTTGAGCCCAGGAATTTGTGGCCAGCCTGGGCAACAA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
3,157,800
1
AAATCCTCTGCTAGTTTTATAAACACTTTTGGACAATTTCCTCAAATTTATAAAGGGTAAGAATTGAGGCTTCACAGATGACAACGAAAATGGCAAGGAATGCATCAATCTTCTTATGCAGTGCCGAACTCAGAGCCAAAACAACAGAAG
120homo sapiens
G000009925
ASM992v1
GCF_000009925.1
PRJNA58195
SAMD00061068
null
2004/09/16
Kitasato Univ.
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/925/GCF_000009925.1_ASM992v1
637,000,025
RS_GCF_000009925.1
Monoisolate
Complete Genome
Full
reference genome
Major
295,405
817
Bacteroides fragilis YCH46
strain=YCH46
null
Bacteria
Bacteroidetes
Bacteroidia
Bacteroidales
Bacteroidaceae
Bacteroides
Bacteroides fragilis
true
Eubacteria
Bacteroidetes
1
0.998
0.9
1
5,310,990
2
43.2
5,277,274
1
4,416
1,603,639
88.979964
99.26
0
0
347
yes
yes
yes
20
high
231,400
0
GCCGGTGCTGGGGTTGACCTTCCTGATCATGGCAATGGGCATAGCTATTCCTTTCACATCGTTTGGCCTGTCGATAGGACTTGAACCGTTACCGTTGAGTTACTTCCCCTGGCTGGTGCTTATCTTGGTATCCTACTGTGTTCTTACACA
10Bacteroides fragilis YCH46
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
6,948,000
1
TGTTGAATTTCACATTTGCTGATCCACCTGTCCACTCCACATCGCCACTTGGCTGTCCAACAAGTGTCTCAAATATCAGGAGCCCAAAGCTGAGCCCCTGAACTTCCCCTCCTGAGTCCCACTTCACTGCAGCCTGCCCATCTTGGTCAG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,054,250
1
CCCACAGGGCAGGCTCATTTAGAGGGACAGGGCCTTTTCAGAGAGGGTGGCTTCCCACTAATGACCCTTGTCCCTAGCCCCTCCACCCTCACTGCTGCTGAAGGTGCCAAGCCACCCTCCCTCCATCTCTCTACTGCCTGCTGGGAGGGG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
9,556,950
1
GCCCAGGAAGTTGAGGCTAAGGTGAGCCATGACTGCACCACTGCATTCCAGCCTGGGCGAAGGAGTAAGACCCTGTCTCCAAATAAAAAAGGAGTAAGGCCTTGTCTCCAAATAAAAAAAAAGATCTTTTGTGTGTTAACGACATGACTG
120homo sapiens
G000010585
ASM1058v1
GCF_000010585.1
PRJNA224116
SAMD00060930
null
2009/01/28
Juntendo University School of Medicine
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/585/GCF_000010585.1_ASM1058v1
643,348,562
RS_GCF_000010585.1
Monoisolate
Complete Genome
Full
representative genome
Major
458,233
69,966
Macrococcus caseolyticus JCSC5402
strain=JCSC5402
null
Bacteria
Firmicutes
Bacilli
Bacillales
Staphylococcaceae
Macrococcus
Macrococcus caseolyticus
true
Eubacteria
Firmicutes
1
0.965
1
1
2,219,737
9
36.56
2,102,324
1
2,352
677,409
89.896055
96.13
1.1
0
339
yes
yes
yes
20
high
1,318,980
0
TTAAAAGCCTCAAGCTGCTGCTGCATGTACTTTCTAATCGCTGGTTTAACAAGTGTATAGACAACTATCGATTCCTGTTCCTTTGATAGATTAATAACTTCATCAATATTCTCGGTCGTCTCGATATAAGGTAATCGTATTGTATCAATC
55Macrococcus caseolyticus JCSC5402
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
6,897,300
1
ACACTGGGCACTTATGGTTTCACTGGGTGCAGGCACTGGGCATGGATGGTTTCATTGGGTGCATGCCCTGAGCACTCATGGTTTCACTGGGCACAGGCCCTGGGCACTCATGGTTTCACTGGGTGCAGGCCCTGGGCACTCATGGTTTCA
120homo sapiens
G000008165
ASM816v1
GCF_000008165.1
PRJNA58091
SAMN02598266
null
2004/06/24
DOE Joint Genome Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/165/GCF_000008165.1_ASM816v1
637,000,015
RS_GCF_000008165.1
Monoisolate
Complete Genome
Full
reference genome
Major
260,799
1,392
Bacillus anthracis str. Sterne
strain=Sterne
null
Bacteria
Firmicutes
Bacilli
Bacillales
Bacillaceae
Bacillus
Bacillus anthracis
true
Eubacteria
Firmicutes
1
1
1
1
5,228,663
1
35.38
5,228,663
1
5,471
1,495,624
84.251844
99.23
0.15
0
381
yes
yes
yes
20
high
4,288,830
0
GTCCGCGGTGGCTAATGGCATTTTTCTCATCTGAACTTAGTTCCGCCATCGCTTTTTTATATTCTTCCACATAAAAGATTGGATCATATCCAAAGCCGTTTTCCCCGCGGCGTTGTTCTAAAATAAATCCTTCACATGTCCCGTTTACAA
6Bacillus anthracis str. Sterne ASM816v1
G000008605
ASM860v1
GCF_000008605.1
PRJNA224116
SAMN02604348
null
1999/12/22
US DOE Joint Genome Institute (JGI-PGF)
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/605/GCF_000008605.1_ASM860v1
637,000,328
GB_GCA_000008605.1
Monoisolate
Complete Genome
Full
representative genome
Major
243,276
160
Treponema pallidum subsp. pallidum str. Nichols
strain=Nichols
null
Bacteria
Spirochaetes
Spirochaetia
Spirochaetales
Spirochaetaceae
Treponema
Treponema pallidum
true
Eubacteria
Spirochaetes
0.99
1
1
1
1,138,011
1
52.78
1,138,011
1
1,009
357,124
92.473447
100
0
0
190
yes
yes
yes
20
high
262,210
0
AAGGCTTTATGGTTACTAGGGACGCGGCTCATGCCGGAGGGGACTATGTTGGTTATTTCAAGGACGTCAAGATTATCTATGATAAGGCGGTGCTGAGTACGGTGCGCGATTTTGCGGACGAGGACCTGTGGGGTATCCAGGCGCGGCGTG
105Treponema pallidum subsp. pallidum str. Nichols ASM860v1
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
6,122,850
1
GTGGCTTAGGAAACCCCTGGAAAGGTCAGCAGTGGGTGGGGGTGGCGGGGCAGACCCTCATGCTTCCCTATGGGAAGGTTAACCCAGCAGGCAGACCTCCCTGGCGCACATCTTCACATCTTGCTCTAGGACAGATGGGGGAGGGGAGGA
120homo sapiens
G000010665
ASM1066v1
GCF_000010665.1
PRJNA224116
SAMD00060954
null
2009/06/11
National Institute of Technology and Evaluation
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/665/GCF_000010665.1_ASM1066v1
644,736,352
RS_GCF_000010665.1
Monoisolate
Complete Genome
Full
representative genome
Major
573,370
184,917
Desulfovibrio magneticus RS-1
strain=RS-1
null
Bacteria
Proteobacteria
Deltaproteobacteria
Desulfovibrionales
Desulfovibrionaceae
Desulfovibrio
Desulfovibrio magneticus
true
Eubacteria
Proteobacteria
0.99
0.996
1
1
5,315,620
3
62.67
5,248,049
1
4,555
1,546,858
85.744052
100
0
0
357
yes
yes
yes
20
high
1,148,420
0
CATCCCTCTTTGACCTTGGGGATGTCGGCATGACGCGGGAGCAGGTGCAGAAAGAACTTCTGGAGTTGCTGGCCGGGGCCAGCGAAGAGCAAGTGCGAGCGATCCTGACCATGGCCCGGGTGCTGATCCAGAAGTGACCTGGGCTTTCCC
36Desulfovibrio magneticus RS-1
G000007625
ASM762v1
GCF_000007625.1
PRJNA224116
SAMN02603289
null
2003/02/05
Gottingen Genomics Laboratory
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/625/GCF_000007625.1_ASM762v1
637,000,080
RS_GCF_000007625.1
Monoisolate
Complete Genome
Full
representative genome
Major
212,717
1,513
Clostridium tetani E88
strain=Massachusetts substr. E88
null
Bacteria
Firmicutes
Clostridia
Clostridiales
Clostridiaceae
Clostridium
Clostridium tetani
true
Eubacteria
Firmicutes
1
0.997
1
1
2,873,333
2
28.64
2,799,251
1
2,799
856,294
87.797934
98.28
0.14
0
315
yes
yes
yes
20
high
1,740,310
0
AGTTTCACCTATCTCACATATAAATTTAAATTTTCCAAGTCCTCTTATAGTTATAATACTATTAGGTTTTACAACTTTTGCTTTATCCTTTACAGTTAGGTAATCTAAAAGTACTTTTCCACTTTGTATTAATTCTTCCCCTTTACTTCT
30Clostridium tetani E88 Massachusetts substr. E88
G000010645
ASM1064v1
GCF_000010645.1
PRJNA224116
SAMD00060940
null
2008/11/12
RIKEN Genomic Sciences Center (GSC)
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/645/GCF_000010645.1_ASM1064v1
643,348,524
RS_GCF_000010645.1
Monoisolate
Complete Genome
Full
representative genome
Major
511,995
511,435
Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2
null
null
Bacteria
Bacteroidetes
Bacteroidia
Bacteroidales
null
Candidatus Azobacteroides
Candidatus Azobacteroides pseudotrichonymphae
true
Eubacteria
Bacteroidetes
1
0.968
1
1
1,224,919
5
32.95
1,114,206
1
1,089
310,957
74.780128
89.51
1.09
0
252
yes
yes
yes
20
medium
496,860
0
GAGTTTGTCAATTTGAATACTTTTTTGAAAGTTATTTTTATTTATATATCGGAATTACTTATTTCTTATCAACATTTATTGCAAAATCTAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAACAGTACTTCAGTATTTATATTGAACCT
19Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,069,950
1
TTCTGGATCTTGAATGTTTCTACCTGAAGATTGTGCAGAGCTGTGATTCTCAAAATGTGGCATGAGGACTCCTGGGAGGTCCCTAGACCCAGTGGTGGGTGGGGGTCTTCAAGGCCAAAACTGTTGTCTTCCAGATACTAAGATGATTAA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
471,150
1
GGGCCTGGGGGGCGGAGCGGGGCGGGAGCGGGGGAGGGGCCTGCGGGGCCCGGCGGGGAGGAGCGGGGCTGGGAGGGGCCTGGGGGGCGGAGCGGGGCGGGAGCGGGGGAGGGGGCGGCCCGTCTGACCGGCAAAGCCCCGCCCGCAGGC
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
522,000
1
CATACAATAAACCACATCCGTGTAAAGTACACAAGCGGGTGAGTGTGACCACCCCCTTGAAGCTGCCACCACAGCCAGGACGGTGCCCGGTCCCACACAGCTGCCAGCACTCGCTGCGGCCCCCACAAGCCCGGGCTCCCGGCAGCCAGG
120homo sapiens
G000010605
ASM1060v1
GCF_000010605.1
PRJNA224116
SAMD00060929
null
2008/04/08
The University of Tokyo
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/605/GCF_000010605.1_ASM1060v1
641,522,653
RS_GCF_000010605.1
Monoisolate
Complete Genome
Full
representative genome
Major
455,632
1,911
Streptomyces griseus subsp. griseus NBRC 13350
strain=NBRC 13350
null
Bacteria
Actinobacteria
Actinobacteria
Streptomycetales
Streptomycetaceae
Streptomyces
Streptomyces griseus
true
Eubacteria
Actinobacteria
1
1
1
1
8,545,929
1
72.23
8,545,929
1
7,113
2,547,362
87.837226
99.84
0
0
357
yes
yes
yes
20
high
811,980
0
AGGATGCCACGCCACGTGCTTACCAGCAGCAAGCCGCCCGCCTCGATCACTACACGGCCAGCAGCTCCCACTGGGATTTCTGCCACTGTCTGGCCGTTCGCCGGATCCCAGAGCCGTACGGTGCGGTCGTCACTGGCAACGGCTAGGAGT
96Streptomyces griseus subsp. griseus NBRC 13350
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
9,453,750
1
GCAGAATCCTTGGTGAGGCCAGTTTACCCAGAACCCCGGAAAATTCTGAAATGGACGAGGTTGCAGAACATTTAGAGGCGTGGTCTTCCTGCGTCGTTGAGCTGGGAACGTTGCTACCTCTGAGCTTGGGGCCTAACCTGGGATTAACCT
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
3,133,950
1
CTCCATCTAGACCAGCCAGCATTGGTTTCTTCCACTCCCCCAGCTGCCGCGTGGGAGGCGCCACTGCAAACTTCCCTGGGGTCTCCCAGCTGCTCAGAGATCCCCATGCCCTTCCCTGATCAGCTCCCTGCCCGGTTCTCATCCCGGCGA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,664,900
1
GAGGTCAAGGGTCCAGGGTCAAAGCGGCACCTCCGCAGGAGTGGTGTCAGGGCCCCCGGCTCTAGAGGGCTTTGGGAGAGGGGATGTGCGCAGAAGCCCCCGGCTCTAGAGGGCTTTGGGAGAGGGGATGTCCGCAGAAGCCCCTGGCAT
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,282,200
1
TGGGAGAGACTCGCCATGCTCATGTGTTTCCTCCACTGTTTGCCGGATGCTGTTATTCTGTGGATCCTGGAGGAGAATCCCTCGTGAAAAACAAAAATTACCCCCAGAGAGGGGGAAACAGGAAGACAAAGCTTGTTTTCTGGCTGTGCC
120homo sapiens
G000009365
ASM936v1
GCF_000009365.1
PRJNA224116
SAMEA3138202
null
2006/07/24
German Research Centre for Biotechnology
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/365/GCF_000009365.1_ASM936v1
637,000,004
RS_GCF_000009365.1
Monoisolate
Complete Genome
Full
representative genome
Major
393,595
59,754
Alcanivorax borkumensis SK2
strain=SK2
null
Bacteria
Proteobacteria
Gammaproteobacteria
Oceanospirillales
Alcanivoracaceae
Alcanivorax
Alcanivorax borkumensis
true
Eubacteria
Proteobacteria
1
1
1
1
3,120,143
1
54.73
3,120,143
1
2,820
929,045
87.73194
100
0
0
352
yes
yes
yes
20
high
2,654,600
0
CATCCAGACGAGACACGGTAATGACGGGAAGCGCCATGATTTTCTCCTTAACGTAAAACGCCCCACACGAGCACGGGTCCGTAATGCCGAAATCATTCAGGCACAGATTGGACACTCATGCGGAAGGGGCGAAAAGATCAACAGAAATGG
1Alcanivorax borkumensis SK2
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,709,100
1
GGTGCCACATCCCCCAAAATATCAGGGAATGAGAGAATACAGTTGAAGTACTTCTTGGCATGTATGCACACCAGAAAGCAAACAGACAAGTGAAGTTTGTCTTGCTTACATTTTCTTGATGAAAACTGGAACTGCAGCTATGGTTGATCT
120homo sapiens
G000010125
ASM1012v1
GCF_000010125.1
PRJNA224116
SAMD00061076
null
2005/08/12
Kitasato Institute for Life Sciences, Japan
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/125/GCF_000010125.1_ASM1012v1
637,000,284
RS_GCF_000010125.1
Monoisolate
Complete Genome
Full
representative genome
Major
342,451
29,385
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
strain=ATCC 15305
null
Bacteria
Firmicutes
Bacilli
Bacillales
Staphylococcaceae
Staphylococcus
Staphylococcus saprophyticus
true
Eubacteria
Firmicutes
1
0.992
1
1
2,577,899
3
33.19
2,516,575
1
2,502
730,892
83.519176
99.44
0
0
348
yes
yes
yes
20
high
2,049,320
0
TTTTAGCATGGATTTGTTCCATCATTGCCATAAATGAATAAACGGCTTTTTTTCTTAAATCCGTAGTATGTAACATAATCAATGGCATGCCATCGTCAGCTTGATGTGTATCTAATCCTGTTAAACCAGCTAATGCTTTTTTAAAAGCCT
90Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 ASM1012v1
G000010785
ASM1078v1
GCF_000010785.1
PRJNA224116
SAMD00060961
null
2010/02/11
The University of Tokyo
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/785/GCF_000010785.1_ASM1078v1
646,311,936
RS_GCF_000010785.1
Monoisolate
Complete Genome
Full
representative genome
Major
608,538
940
Hydrogenobacter thermophilus TK-6
strain=TK-6
null
Bacteria
Aquificae
Aquificae
Aquificales
Aquificaceae
Hydrogenobacter
Hydrogenobacter thermophilus
true
Eubacteria
Bacteria
1
1
0.8
1
1,743,135
1
44
1,743,135
1
1,905
573,308
96.888881
98.78
0.51
0
310
yes
yes
yes
20
high
1,103,050
0
AAGGAAAAAGCTTACTCTATGCTACCGTTGTAAGAACTGTAACAGAGGAGCTTAGAAAACTTATGGATGAAAGTGATTGCGTTATATTTGATGGGACCTTCTGGGAAGAAGAGGAGTTACTTAAGTATGATCCTAAAGGAAAAAGATCAA
49Hydrogenobacter thermophilus TK-6 ASM1078v1
G000007005
ASM700v1
GCF_000007005.1
PRJNA224116
SAMN02603227
null
2002/11/25
European/Canadian Consortium
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/005/GCF_000007005.1_ASM700v1
638,154,518
RS_GCF_000007005.1
Monoisolate
Complete Genome
Full
representative genome
Major
273,057
2,287
Sulfolobus solfataricus P2
strain=P2
null
Archaea
Crenarchaeota
Thermoprotei
Sulfolobales
Sulfolobaceae
Sulfolobus
Sulfolobus solfataricus
true
Archaea
Crenarchaeota
0.96
1
1
0.9
2,992,245
1
35.79
2,992,245
1
3,281
874,971
86.125133
100
0
0
196
no
yes
yes
14
medium
1,560,000
0
AAGTATTACAAGAGAAAAACAAATAAGCAAGAAAGAAGAAAACAACATAAGCCCAGTCGCAACATGGGGATAAAAACCCCATTAGATGAGGCTGGCTGTGAAGCCCCTAGAACGATCTAACAAGAGGGGACAAAACCCCGAGTAGGAGTG
97Sulfolobus solfataricus P2
G000007785
ASM778v1
GCF_000007785.1
PRJNA57669
SAMN02603978
null
2003/03/28
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/785/GCF_000007785.1_ASM778v1
637,000,101
RS_GCF_000007785.1
Monoisolate
Complete Genome
Full
reference genome
Major
226,185
1,351
Enterococcus faecalis V583
strain=V583
null
Bacteria
Firmicutes
Bacilli
Lactobacillales
Enterococcaceae
Enterococcus
Enterococcus faecalis
true
Eubacteria
Firmicutes
0.99
0.991
1
1
3,359,974
4
37.38
3,218,031
1
3,271
1,000,353
87.714339
99.53
0.31
0
309
yes
yes
yes
20
high
1,715,740
0
TAAAGACAGTTGTCTTTCTCTAGCTCACAGGACTAATTTCGGCTCTATAATTTATGGAACTGATAAACCAGAATGACTGCTTCAGCTCAATTCCAATTAACTAAAGTCATAAAAAAAGACAAGTTGCTTTTTCGAAGATTCTCGAAAAAA
37Enterococcus faecalis V583 ASM778v1
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,542,650
1
CCAGACATCTTTATCCAGATGACAAAGATATTTTCTCACATGTTCTTTTCTTGGTAAAATTGGGGTAGTTTTAAGGGTCACACCTAGGACTGCACCCATCTGAGTTCACTTGGGTCTGGAATTGACTTTTTGTCATACAGCGAGCCGTTC
120homo sapiens
G000010425
ASM1042v1
GCF_000010425.1
PRJNA224116
SAMD00061080
null
2006/12/05
Gifu University, Life Science Research Center, Japan
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/425/GCF_000010425.1_ASM1042v1
639,633,010
RS_GCF_000010425.1
Monoisolate
Complete Genome
Full
representative genome
Major
367,928
1,680
Bifidobacterium adolescentis ATCC 15703
strain=ATCC 15703
null
Bacteria
Actinobacteria
Actinobacteria
Bifidobacteriales
Bifidobacteriaceae
Bifidobacterium
Bifidobacterium adolescentis
true
Eubacteria
Actinobacteria
1
1
1
1
2,089,645
1
59.18
2,089,645
1
1,683
614,966
86.722338
100
0
0
284
yes
yes
yes
20
high
248,040
0
GATTCCGCTGCCGGCGCCTCCGCGCAGTCTGCACAGACCACCCAGTCGCAGTCGTCCGACCAGGCCGAGGAATTCCTCGGCTTCCGCGTGAACCTGCCGTTTGGCATTCCCGCTGGTCCGCTGCTGAACGAGCGGTTCACCACCGCCGCC
12Bifidobacterium adolescentis ATCC 15703
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
3,060,750
1
CGTAATCCCAGCACTCTGGGAGGCCCAGGCCGGAGGATCTATTGAGGCCAGGACTTTGAGACCAGCCTGGGCAACATATGAGATCCCGTCTCTACAAAAAATAACAAATTAGCTAGGTGTGGTGGCGCACGCCTGTCATCCCAGCTACTC
120homo sapiens