tags:
- biology
- DNA
- Gene Expression
size_categories:
- 100K<n<1M
Promoter Sequences and Corresponding Gene Expression data for Maize NAM lines
The data in this dataset has the promoter sequences and the corresponding gene expression data as TPM values for 26 Maize NAM lines and has been used for the finetuning step (for the downstream task of gene expression prediction) of Florabert.
The data has been split into train, test and eval data (70-20-10 split). In all, there are ~ 7,00,000 entries across the files. The steps followed to obtain this data are available in this Github Repository.
The labels correspond to the TPM values for the various tissues in the order: [ 'tassel', 'base', 'anther', 'middle', 'ear', 'shoot', 'tip', 'root' ]. The sequences that have been used are the promoter sequences for genes of Maize NAM lines that have at least 1 TPM value for a tissue > 1.