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---
tags:
- biology
- DNA
- Gene Expression
size_categories:
- 100K<n<1M
---
# Promoter Sequences and Corresponding Gene Expression data for Maize NAM lines
The data in this dataset has the promoter sequences and the corresponding gene expression data as TPM values for **26 Maize NAM lines** and has been used for the finetuning step *(for the downstream task of gene expression prediction)* of [`Florabert`](https://huggingface.co/Gurveer05/FloraBERT).
The data has been split into train, test and eval data (70-20-10 split). In all, there are ~ 7,00,000 entries across the files. The steps followed to obtain this data are available in this [`Github Repository`](https://github.com/gurveervirk/florabert).
The labels correspond to the TPM values for the various tissues in the order: [
'tassel',
'base',
'anther',
'middle',
'ear',
'shoot',
'tip',
'root'
]. The sequences that have been used are the promoter sequences for genes of Maize NAM lines that have at least 1 TPM value for a tissue > 1. |