add_annotations_to_datasets

.gitattributes

@@ -64,6 +64,3 @@ variant_effect_pathogenic/vep_pathogenic_coding.csv filter=lfs diff=lfs merge=lf
 variant_effect_pathogenic/vep_pathogenic_non_coding.csv filter=lfs diff=lfs merge=lfs -text
 variant_effect_pathogenic/vep_pathogenic_non_coding_subset.csv filter=lfs diff=lfs merge=lfs -text
 variant_effect_causal_eqtl/All_Tissues.csv filter=lfs diff=lfs merge=lfs -text
-hg19_annotations.bed filter=lfs diff=lfs merge=lfs -text
-hg38_annotations.bed filter=lfs diff=lfs merge=lfs -text
-genome_annotation/hg38_repetitive_regions.tsv filter=lfs diff=lfs merge=lfs -text

README.md

@@ -313,9 +313,4 @@ Output: a single binary value
 
 #### Splits
 Train set: chromosomes 1-7,10-22<br>
-Test set: chromosomes 8,9
-
-
-## Genomic Annotations
-The human genome annotations for both hg38 and hg19 reference genomes can be found in the `genome_annotation` folder. These annotations were used in our [visualization tool](https://github.com/kuleshov-group/genomics-lrb-viztool)
-to slice test datasets by different genomic region.
+Test set: chromosomes 8,9

genome_annotation/hg19_annotations.bed

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genome_annotation/hg38_annotations.bed

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genome_annotation/hg38_repetitive_regions.tsv

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