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tags: |
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- biology |
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- DNA |
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- Gene Expression |
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size_categories: |
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- 100K<n<1M |
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--- |
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# Promoter Sequences and Corresponding Gene Expression data for Maize NAM lines |
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The data in this dataset has the promoter sequences and the corresponding gene expression data as TPM values for **26 Maize NAM lines** and has been used for the finetuning step *(for the downstream task of gene expression prediction)* of [`Florabert`](https://huggingface.co/Gurveer05/FloraBERT). |
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The data has been split into train, test and eval data (70-20-10 split). In all, there are ~ 7,00,000 entries across the files. The steps followed to obtain this data are available in this [`Github Repository`](https://github.com/gurveervirk/florabert). |
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The labels correspond to the TPM values for the various tissues in the order: [ |
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'tassel', |
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'base', |
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'anther', |
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'middle', |
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'ear', |
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'shoot', |
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'tip', |
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'root' |
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]. The sequences that have been used are the promoter sequences for genes of Maize NAM lines that have at least 1 TPM value for a tissue > 1. |
