BP-GWAS-Prioritise

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hlnicholls commited on Apr 8

Commit

0685cd6

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1 Parent(s): f8a37b1

fix: updated data

Browse files

Files changed (5) hide show

all_genes_imputed_features.csv +0 -0
all_genes_merged_ml_data.csv +0 -3
app.py +1 -1
best_model_fitted.pkl +2 -2
training_cleaned.csv +294 -294

all_genes_imputed_features.csv ADDED Viewed

The diff for this file is too large to render. See raw diff

all_genes_merged_ml_data.csv DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:48379a1936ac443646c18041d4937b66a889dd77ae79b7ef41547bbc0b905094
-size 13271514

app.py CHANGED Viewed

@@ -26,7 +26,7 @@ st.set_option('deprecation.showPyplotGlobalUse', False)
 seed = 0
-annotations = pd.read_csv("all_genes_merged_ml_data.csv")
 annotations.fillna(0, inplace=True)
 annotations = annotations.set_index("Gene")

 seed = 0
+annotations = pd.read_csv("all_genes_imputed_features.csv")
 annotations.fillna(0, inplace=True)
 annotations = annotations.set_index("Gene")

best_model_fitted.pkl CHANGED Viewed

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:801047e89c0ac2687878f7f6387d65db06b8388e1a955090514d5b6bac6af504
-size 37986

 version https://git-lfs.github.com/spec/v1
+oid sha256:7d82b049d1b95b092bc2316f7eb313de074c656b5d456ac769a5a2684859861d
+size 37804

training_cleaned.csv CHANGED Viewed

@@ -1,294 +1,294 @@
-Gene,BPlabel_encoded,gene_damage_index_score,Pancreas_GTExTPM,EsophagusGastroesophagealJunction_GTExTPM,HeartAtrialAppendage_GTExTPM,KidneyCortex_GTExTPM,Liver_GTExTPM,Pituitary_GTExTPM,Testis_GTExTPM,BrainFrontalCortexBA9_GTExTPM,AdrenalGland_GTExTPM,CellsEBVtransformedlymphocytes_GTExTPM,ExomiserScore_increasedBP,HIPred_haploinsufficiency,pLI_exac,SDI_essentiality
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-EDN1,0.0,747.20557,4.35487,15.6197,5.8782,7.74968,1.52907,2.08775,7.74557,7.42269,2.28856,10.8395,0.887688063,0.449802697,0.0810200671130622,6.87802251
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-IL6,1.0,133.86335,0.438574,5.99591,5.28138,1.00782,0.22322,5.7234,0.625845,0.518696,1.13151,0.247947,0.549225289,0.401833534,0.289669116993916,3.9639913
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-MGC10955,2.0,3.53068,13.65617414285715,44.11008142857145,1270.5142242857141,28.40648999999999,33.941314342857126,38.213966,48.66193514285713,20.709591428571443,43.09993428571427,81.64262300000001,0.2504094366571429,0.24764462014285737,0.20942474738277742,6.835167127142861
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-MYO9B,0.0,547.26349,8.59824,35.9496,15.9081,10.2196,11.9914,26.0401,81.3088,14.3557,29.945,105.092,0.504688016,0.792072892,0.999998877096737,7.54165982
-NBPF6,2.0,3780.70014,0.0,0.0,0.0,0.0,0.0,0.292167,1.51697,0.0,0.0,0.0,0.0,0.111908376,0.0874538512080049,0.0
-NDUFA2,1.0,11.36697,19.3938,43.614,46.4213,52.029,39.1901,61.6546,79.8628,57.4096,70.5451,83.4268,0.504575901,0.432313383,0.339536516355874,2.00140612
-NDUFS3,1.0,27.09868,17.0321,41.9851,41.2143,36.7924,28.5577,54.4568,48.6447,68.7026,54.8533,62.5508,0.504860922,0.320700407,0.0471370341289045,5.62602042
-NEDD4L,0.0,42.02222,7.40556,5.91067,5.9425,12.514,2.45612,16.2123,4.1627,14.4233,5.59453,3.8322,0.899703515,0.824708164,0.999966646256687,7.68047773
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-NOS3,1.0,363.12652,1.35933,8.03375,8.83257,5.76301,1.8293,8.49258,13.1943,2.41465,4.97365,0.235102,0.957427108,0.636561334,2.21161070571318e-05,9.79939448
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-OSGIN2,1.0,235.93423,2.45396,23.1231,5.99989,6.23906,4.52536,16.347,24.6983,10.2651,5.95188,24.9875,0.500045276,0.579714477,0.988642484366364,6.868037084857145
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-PKD1L3,1.0,438.7310064285717,0.0243586,0.109003,0.270404,0.0549654,0.570161,1.0015,1.39554,0.0433713,0.128442,0.0173583,0.5068964507142856,0.6455923174428569,0.19973606313877693,5.95345819
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