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Update plant-multi-species-genomes.py

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  1. plant-multi-species-genomes.py +16 -5
plant-multi-species-genomes.py CHANGED
@@ -4,25 +4,36 @@ from 48 different species."""
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  from typing import List
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  import datasets
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- import pandas as pd
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  from Bio import SeqIO
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  import os
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  # Find for instance the citation on arxiv or on the dataset repo/website
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- _CITATION = """"""
 
 
 
 
 
 
 
 
 
 
 
 
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  # You can copy an official description
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  _DESCRIPTION = """\
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  Dataset made of diverse genomes available on NCBI and coming from 48 different species.
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  Test and validation are made of 2 species each. The rest of the genomes are used for training.
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- Default configuration "6kbp" yields chunks of 6.2kbp (100bp overlap on each side).The chunks of DNA are cleaned and processed so that
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  they can only contain the letters A, T, C, G and N.
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  """
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- _HOMEPAGE = "" #"https://www.ncbi.nlm.nih.gov/"
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- _LICENSE = "" #"https://www.ncbi.nlm.nih.gov/home/about/policies/"
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  _CHUNK_LENGTHS = [6000,]
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  from typing import List
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  import datasets
 
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  from Bio import SeqIO
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  import os
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  # Find for instance the citation on arxiv or on the dataset repo/website
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+ _CITATION = """\
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+ @article{o2016reference,
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+ title={Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation},
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+ author={O'Leary, Nuala A and Wright, Mathew W and Brister, J Rodney and Ciufo, Stacy and Haddad, Diana and McVeigh, Rich and Rajput, Bhanu and Robbertse, Barbara and Smith-White, Brian and Ako-Adjei, Danso and others},
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+ journal={Nucleic acids research},
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+ volume={44},
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+ number={D1},
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+ pages={D733--D745},
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+ year={2016},
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+ publisher={Oxford University Press}
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+ }
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+ """
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+
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  # You can copy an official description
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  _DESCRIPTION = """\
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  Dataset made of diverse genomes available on NCBI and coming from 48 different species.
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  Test and validation are made of 2 species each. The rest of the genomes are used for training.
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+ Default configuration "6kbp" yields chunks of 6.2kbp (100bp overlap on each side). The chunks of DNA are cleaned and processed so that
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  they can only contain the letters A, T, C, G and N.
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  """
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+ _HOMEPAGE = "https://www.ncbi.nlm.nih.gov/"
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+ _LICENSE = "https://www.ncbi.nlm.nih.gov/home/about/policies/"
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  _CHUNK_LENGTHS = [6000,]
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