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71c5b39
1 Parent(s): 2a3e948

Update plant-multi-species-genomes.py

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  1. plant-multi-species-genomes.py +2 -1
plant-multi-species-genomes.py CHANGED
@@ -6,6 +6,7 @@ from typing import List
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  import datasets
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  import pandas as pd
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  from Bio import SeqIO
 
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  # Find for instance the citation on arxiv or on the dataset repo/website
@@ -104,7 +105,7 @@ class PlantMultiSpeciesGenomes(datasets.GeneratorBasedBuilder):
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  filepaths_txt = dl_manager.download_and_extract('plant_genome_file_names.txt')
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  with open(filepaths_txt) as f:
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- filepaths = [filepath.rstrip() for filepath in f]
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  test_paths = filepaths[-2:] # 2 genomes for test set
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  validation_paths = filepaths[-4:-2] # 2 genomes for validation set
 
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  import datasets
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  import pandas as pd
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  from Bio import SeqIO
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+ import os
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  # Find for instance the citation on arxiv or on the dataset repo/website
 
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  filepaths_txt = dl_manager.download_and_extract('plant_genome_file_names.txt')
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  with open(filepaths_txt) as f:
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+ filepaths = [os.path.join("plant_genomes",filepath.rstrip()) for filepath in f]
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  test_paths = filepaths[-2:] # 2 genomes for test set
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  validation_paths = filepaths[-4:-2] # 2 genomes for validation set