etrop commited on
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1 Parent(s): d9ef31c

Update plant-genomic-benchmark.py

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  1. plant-genomic-benchmark.py +11 -14
plant-genomic-benchmark.py CHANGED
@@ -1,7 +1,5 @@
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  # See the License for the specific language governing permissions and
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  # limitations under the License.
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- # TODO: Address all TODOs and remove all explanatory comments
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- """TODO: Add a description here."""
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  import os
@@ -10,16 +8,16 @@ from Bio import SeqIO
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  import datasets
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- # TODO: Add BibTeX citation
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- _CITATION = ''
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- # """\
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- # @InProceedings{huggingface:dataset,
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- # title = {A great new dataset},
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- # author={huggingface, Inc.
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- # },
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- # year={2020}
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- # }
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- # """
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  _DESCRIPTION = """\
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  This dataset comprises the various supervised learning tasks considered in the agro-nt
@@ -29,8 +27,7 @@ predicting regulatory features, RNA processing sites, and gene expression values
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  """
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- # TODO: Add the licence for the dataset here if you can find it
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- _LICENSE = ""
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  _TASK_NAMES = ['poly_a.arabidopsis_thaliana',
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  'poly_a.oryza_sativa_indica_group',
 
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  # See the License for the specific language governing permissions and
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  # limitations under the License.
 
 
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  import os
 
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  import datasets
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+ _CITATION = '''\
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+ @article{mendoza2023foundational,
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+ title={A Foundational Large Language Model for Edible Plant Genomes},
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+ author={Mendoza-Revilla, Javier and Trop, Evan and Gonzalez, Liam and Roller, Masa and Dalla-Torre, Hugo and de Almeida, Bernardo P and Richard, Guillaume and Caton, Jonathan and Lopez Carranza, Nicolas and Skwark, Marcin and others},
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+ journal={bioRxiv},
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+ pages={2023--10},
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+ year={2023},
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+ publisher={Cold Spring Harbor Laboratory}
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+ }
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+ '''
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  _DESCRIPTION = """\
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  This dataset comprises the various supervised learning tasks considered in the agro-nt
 
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  """
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+ _LICENSE = "https://huggingface.co/datasets/InstaDeepAI/plant-genomic-benchmark/blob/main/LICENSE.md"
 
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  _TASK_NAMES = ['poly_a.arabidopsis_thaliana',
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  'poly_a.oryza_sativa_indica_group',