hdallatorre commited on
Commit
c5ef047
1 Parent(s): 1fda619

Update nucleotide_transformer_downstream_tasks.py

Browse files
nucleotide_transformer_downstream_tasks.py CHANGED
@@ -12,8 +12,8 @@
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  # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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  # See the License for the specific language governing permissions and
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  # limitations under the License.
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- """Script for the dataset containing all the downstream tasks from the Nucleotide
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- Transformer paper. There are 18 downstream tasks."""
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  from typing import List
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  import datasets
@@ -33,7 +33,7 @@ _CITATION = """\
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  # You can copy an official description
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  _DESCRIPTION = """\
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- 18 classification downstream tasks from the Nucleotide Transformer paper. Each task
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  corresponds to a dataset configuration.
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  """
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@@ -42,23 +42,7 @@ _HOMEPAGE = "https://github.com/instadeepai/nucleotide-transformer"
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  _LICENSE = "https://github.com/instadeepai/nucleotide-transformer/LICENSE.md"
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  _TASKS = [
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- 'H4ac',
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- 'H3K36me3',
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- 'splice_sites_donors',
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- 'splice_sites_acceptors',
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- 'H3',
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- 'H4',
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- 'H3K4me3',
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- 'splice_sites_all',
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- 'H3K4me1',
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- 'H3K14ac',
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- 'enhancers_types',
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- 'promoter_no_tata',
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- 'H3K79me3',
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- 'H3K4me2',
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- 'promoter_tata',
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  'enhancers',
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- 'H3K9ac',
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  'promoter_all'
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  ]
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@@ -81,10 +65,6 @@ class NucleotideTransformerDownstreamTasksConfig(datasets.BuilderConfig):
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  class NucleotideTransformerDownstreamTasks(datasets.GeneratorBasedBuilder):
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- """Genomes from 850 species, filtered and split into chunks of consecutive
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- nucleotides. 50 genomes are taken for test, 50 for validation and 800
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- for training."""
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-
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  VERSION = datasets.Version("1.1.0")
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  BUILDER_CONFIG_CLASS = NucleotideTransformerDownstreamTasksConfig
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  BUILDER_CONFIGS = [
 
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  # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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  # See the License for the specific language governing permissions and
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  # limitations under the License.
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+ """Script for the dataset containing the "promoter_all" and "enhancers" downstream tasks from the Nucleotide
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+ Transformer paper."""
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  from typing import List
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  import datasets
 
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  # You can copy an official description
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  _DESCRIPTION = """\
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+ 2 of the 18 classification downstream tasks from the Nucleotide Transformer paper. Each task
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  corresponds to a dataset configuration.
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  """
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  _LICENSE = "https://github.com/instadeepai/nucleotide-transformer/LICENSE.md"
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  _TASKS = [
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  'enhancers',
 
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  'promoter_all'
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  ]
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  class NucleotideTransformerDownstreamTasks(datasets.GeneratorBasedBuilder):
 
 
 
 
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  VERSION = datasets.Version("1.1.0")
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  BUILDER_CONFIG_CLASS = NucleotideTransformerDownstreamTasksConfig
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  BUILDER_CONFIGS = [